Strain Fitness in Pseudomonas putida KT2440 around PP_0469

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0466 and PP_0467 are separated by 13 nucleotidesPP_0467 and PP_0468 are separated by 208 nucleotidesPP_0468 and PP_0469 are separated by 12 nucleotidesPP_0469 and PP_0470 are separated by 10 nucleotidesPP_0470 and PP_0471 are separated by 3 nucleotidesPP_0471 and PP_0472 are separated by 2 nucleotides PP_0466: PP_0466 - 50S ribosomal protein L5, at 556,399 to 556,938 _0466 PP_0467: PP_0467 - 30S ribosomal protein S14, at 556,952 to 557,257 _0467 PP_0468: PP_0468 - 30S ribosomal protein S8, at 557,466 to 557,858 _0468 PP_0469: PP_0469 - 50S ribosomal protein L6, at 557,871 to 558,404 _0469 PP_0470: PP_0470 - 50S ribosomal protein L18, at 558,415 to 558,765 _0470 PP_0471: PP_0471 - 30S ribosomal protein S5, at 558,769 to 559,269 _0471 PP_0472: PP_0472 - 50S ribosomal protein L30, at 559,272 to 559,448 _0472 Position (kb) 557 558 559Strain fitness (log2 ratio) -1 0 1at 557.332 kb on + strandat 557.332 kb on + strandat 557.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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557,332 + +0.5
557,332 + +0.0
557,332 + -0.4

Or see this region's nucleotide sequence