Strain Fitness in Pseudomonas putida KT2440 around PP_0465

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0461 and PP_0462 overlap by 4 nucleotidesPP_0462 and PP_0463 are separated by 2 nucleotidesPP_0463 and PP_0464 are separated by 23 nucleotidesPP_0464 and PP_0465 are separated by 11 nucleotidesPP_0465 and PP_0466 are separated by 20 nucleotidesPP_0466 and PP_0467 are separated by 13 nucleotides PP_0461: PP_0461 - 50S ribosomal protein L16, at 554,787 to 555,200 _0461 PP_0462: PP_0462 - 50S ribosomal subunit protein L29, at 555,197 to 555,391 _0462 PP_0463: PP_0463 - 30S ribosomal protein S17, at 555,394 to 555,660 _0463 PP_0464: PP_0464 - 50S ribosomal protein L14, at 555,684 to 556,052 _0464 PP_0465: PP_0465 - 50S ribosomal protein L24, at 556,064 to 556,378 _0465 PP_0466: PP_0466 - 50S ribosomal protein L5, at 556,399 to 556,938 _0466 PP_0467: PP_0467 - 30S ribosomal protein S14, at 556,952 to 557,257 _0467 Position (kb) 556 557Strain fitness (log2 ratio) -1 0 1at 557.332 kb on + strandat 557.332 kb on + strandat 557.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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557,332 + +0.5
557,332 + +0.0
557,332 + -0.4

Or see this region's nucleotide sequence