Strain Fitness in Pseudomonas putida KT2440 around PP_0448

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0447 and PP_0448 are separated by 64 nucleotidesPP_0448 and PP_0449 are separated by 211 nucleotidesPP_0449 and PP_0450 are separated by 106 nucleotides PP_0447: PP_0447 - DNA-directed RNA polymerase subunit beta, at 537,623 to 541,696 _0447 PP_0448: PP_0448 - DNA-directed RNA polymerase subunit beta', at 541,761 to 545,960 _0448 PP_0449: PP_0449 - 30S ribosomal protein S12, at 546,172 to 546,543 _0449 PP_0450: PP_0450 - 30S ribosomal protein S7, at 546,650 to 547,120 _0450 Position (kb) 541 542 543 544 545 546Strain fitness (log2 ratio) -2 -1 0 1 2at 545.902 kb on + strandat 545.902 kb on + strandat 545.902 kb on + strandat 545.958 kb on + strandat 545.958 kb on + strandat 545.958 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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545,902 + +0.0
545,902 + +1.8
545,902 + -0.8
545,958 + -0.8
545,958 + -1.9
545,958 + -0.6

Or see this region's nucleotide sequence