Strain Fitness in Pseudomonas putida KT2440 around PP_0445

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0443 and PP_0444 overlap by 1 nucleotidesPP_0444 and PP_0445 are separated by 197 nucleotidesPP_0445 and PP_0446 are separated by 77 nucleotidesPP_0446 and PP_0447 are separated by 220 nucleotides PP_0443: PP_0443 - 50S ribosomal protein L11, at 535,135 to 535,566 _0443 PP_0444: PP_0444 - 50S ribosomal protein L1, at 535,566 to 536,261 _0444 PP_0445: PP_0445 - 50S ribosomal protein L10, at 536,459 to 536,959 _0445 PP_0446: PP_0446 - 50S ribosomal protein L7/L12, at 537,037 to 537,402 _0446 PP_0447: PP_0447 - DNA-directed RNA polymerase subunit beta, at 537,623 to 541,696 _0447 Position (kb) 536 537Strain fitness (log2 ratio) -1 0 1at 537.459 kb on + strandat 537.459 kb on + strandat 537.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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537,459 + +0.3
537,459 + -0.9
537,459 + +0.3

Or see this region's nucleotide sequence