Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_23SC and PP_5SC are separated by 119 nucleotides PP_5SC and PP_0437 are separated by 183 nucleotides PP_0437 and PP_0438 overlap by 11 nucleotides PP_0438 and PP_0439 overlap by 32 nucleotides
PP_23SC: PP_23SC - 23S ribosomal RNA, at 526,763 to 529,664
_23SC
PP_5SC: PP_5SC - 5S ribosomal RNA, at 529,784 to 529,903
_5SC
PP_0437: PP_0437 - bifunctional biotin-[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 530,087 to 531,046
_0437
PP_0438: PP_0438 - Type III pantothenate kinase, at 531,036 to 531,785
_0438
PP_0439: PP_0439 - conserved protein of unknown function, at 531,754 to 532,218
_0439
Position (kb) 530
531
532 Strain fitness (log2 ratio) -1
0
1
2 at 529.920 kb on + strand at 529.936 kb on + strand at 530.030 kb on + strand at 530.053 kb on + strand at 531.792 kb on + strand at 531.792 kb on + strand at 531.793 kb on - strand at 531.815 kb on + strand, within PP_0439 at 531.836 kb on - strand, within PP_0439 at 531.836 kb on - strand, within PP_0439 at 531.838 kb on + strand, within PP_0439 at 531.839 kb on - strand, within PP_0439 at 531.839 kb on - strand, within PP_0439 at 531.842 kb on + strand, within PP_0439 at 531.842 kb on + strand, within PP_0439 at 531.843 kb on - strand, within PP_0439 at 531.843 kb on - strand, within PP_0439 at 531.898 kb on + strand, within PP_0439 at 531.899 kb on - strand, within PP_0439 at 531.899 kb on - strand, within PP_0439
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 529,920 + -0.3 529,936 + +0.2 530,030 + +0.3 530,053 + -0.1 531,792 + -0.5 531,792 + +0.4 531,793 - -1.4 531,815 + PP_0439 0.13 -0.1 531,836 - PP_0439 0.18 -1.3 531,836 - PP_0439 0.18 +0.2 531,838 + PP_0439 0.18 +0.8 531,839 - PP_0439 0.18 +1.9 531,839 - PP_0439 0.18 -0.3 531,842 + PP_0439 0.19 -0.5 531,842 + PP_0439 0.19 -0.7 531,843 - PP_0439 0.19 +1.8 531,843 - PP_0439 0.19 -0.1 531,898 + PP_0439 0.31 +0.7 531,899 - PP_0439 0.31 -0.6 531,899 - PP_0439 0.31 -0.5
Or see this region's nucleotide sequence