Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0403 and PP_0404 overlap by 20 nucleotides PP_0404 and PP_0405 are separated by 130 nucleotides
PP_0403: PP_0403 - peptidyl-prolyl cis-trans isomerase, at 488,298 to 489,617
_0403
PP_0404: PP_0404 - LPS-assembly protein LptD, at 489,598 to 492,420
_0404
PP_0405: PP_0405 - conserved protein of unknown function, at 492,551 to 493,570
_0405
Position (kb) 489
490
491
492
493 Strain fitness (log2 ratio) -1
0
1 at 489.674 kb on - strand at 492.506 kb on - strand at 492.567 kb on + strand at 492.567 kb on + strand at 492.567 kb on + strand at 492.567 kb on + strand at 492.568 kb on - strand at 492.568 kb on - strand at 492.568 kb on - strand at 492.568 kb on - strand at 492.693 kb on - strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.879 kb on - strand, within PP_0405 at 492.879 kb on - strand, within PP_0405 at 492.983 kb on + strand, within PP_0405 at 492.984 kb on - strand, within PP_0405 at 492.984 kb on - strand, within PP_0405 at 493.031 kb on + strand, within PP_0405 at 493.032 kb on - strand, within PP_0405 at 493.032 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.151 kb on + strand, within PP_0405 at 493.151 kb on + strand, within PP_0405 at 493.152 kb on - strand, within PP_0405 at 493.152 kb on - strand, within PP_0405 at 493.216 kb on - strand, within PP_0405 at 493.217 kb on + strand, within PP_0405 at 493.217 kb on + strand, within PP_0405 at 493.232 kb on + strand, within PP_0405 at 493.232 kb on + strand, within PP_0405 at 493.233 kb on - strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.241 kb on - strand, within PP_0405 at 493.241 kb on - strand, within PP_0405
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 489,674 - -1.2 492,506 - -0.2 492,567 + -0.0 492,567 + +0.5 492,567 + +0.9 492,567 + -0.7 492,568 - -0.4 492,568 - +0.3 492,568 - +0.4 492,568 - +0.0 492,693 - PP_0405 0.14 -0.5 492,804 + PP_0405 0.25 +0.5 492,804 + PP_0405 0.25 +0.1 492,804 + PP_0405 0.25 -0.1 492,804 + PP_0405 0.25 -0.1 492,804 + PP_0405 0.25 -0.1 492,804 + PP_0405 0.25 +0.8 492,804 + PP_0405 0.25 +0.3 492,804 + PP_0405 0.25 +0.3 492,804 + PP_0405 0.25 -0.6 492,804 + PP_0405 0.25 -0.5 492,804 + PP_0405 0.25 -0.1 492,805 - PP_0405 0.25 +0.1 492,805 - PP_0405 0.25 +0.1 492,805 - PP_0405 0.25 +0.2 492,805 - PP_0405 0.25 -0.1 492,805 - PP_0405 0.25 -0.3 492,878 + PP_0405 0.32 +0.4 492,878 + PP_0405 0.32 +0.0 492,878 + PP_0405 0.32 +0.7 492,878 + PP_0405 0.32 +0.2 492,878 + PP_0405 0.32 +0.2 492,879 - PP_0405 0.32 -0.2 492,879 - PP_0405 0.32 +0.2 492,983 + PP_0405 0.42 -0.3 492,984 - PP_0405 0.42 -0.1 492,984 - PP_0405 0.42 +0.3 493,031 + PP_0405 0.47 +0.3 493,032 - PP_0405 0.47 +0.1 493,032 - PP_0405 0.47 +0.0 493,141 - PP_0405 0.58 -0.0 493,141 - +0.2 493,141 - PP_0405 0.58 +0.5 493,141 - PP_0405 0.58 -0.2 493,141 - PP_0405 0.58 -0.2 493,141 - PP_0405 0.58 +0.4 493,151 + PP_0405 0.59 +0.2 493,151 + PP_0405 0.59 -0.1 493,152 - PP_0405 0.59 +0.1 493,152 - PP_0405 0.59 -1.1 493,216 - PP_0405 0.65 -0.1 493,217 + PP_0405 0.65 -0.3 493,217 + PP_0405 0.65 +0.0 493,232 + PP_0405 0.67 -0.3 493,232 + PP_0405 0.67 -0.6 493,233 - PP_0405 0.67 -0.3 493,240 + PP_0405 0.68 -0.4 493,240 + PP_0405 0.68 -0.1 493,240 + PP_0405 0.68 -0.2 493,240 + PP_0405 0.68 +0.2 493,240 + PP_0405 0.68 -0.4 493,240 + PP_0405 0.68 -0.0 493,241 - PP_0405 0.68 -0.1 493,241 - PP_0405 0.68 -0.4
Or see this region's nucleotide sequence