Strain Fitness in Pseudomonas putida KT2440 around PP_0403

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0401 and PP_0402 overlap by 4 nucleotidesPP_0402 and PP_0403 overlap by 4 nucleotidesPP_0403 and PP_0404 overlap by 20 nucleotides PP_0401: PP_0401 - Ribosomal RNA small subunit methyltransferase A, at 486,512 to 487,315 _0401 PP_0402: PP_0402 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 487,312 to 488,301 _0402 PP_0403: PP_0403 - peptidyl-prolyl cis-trans isomerase, at 488,298 to 489,617 _0403 PP_0404: PP_0404 - LPS-assembly protein LptD, at 489,598 to 492,420 _0404 Position (kb) 488 489 490Strain fitness (log2 ratio) -1 0 1at 487.302 kb on + strandat 487.303 kb on - strandat 489.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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487,302 + -1.0
487,303 - -0.2
489,674 - -1.2

Or see this region's nucleotide sequence