Strain Fitness in Pseudomonas putida KT2440 around PP_0175

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0174 and PP_0175 are separated by 132 nucleotidesPP_0175 and PP_0176 overlap by 4 nucleotides PP_0174: PP_0174 - conserved protein of unknown function, at 225,775 to 226,593 _0174 PP_0175: PP_0175 - putative transcriptional regulator, at 226,726 to 227,178 _0175 PP_0176: PP_0176 - putative efflux transporter, at 227,175 to 229,262 _0176 Position (kb) 226 227 228Strain fitness (log2 ratio) -1 0 1 2at 225.816 kb on + strandat 225.828 kb on - strandat 225.974 kb on - strand, within PP_0174at 225.974 kb on - strand, within PP_0174at 226.054 kb on + strand, within PP_0174at 226.151 kb on - strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strandat 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.312 kb on + strand, within PP_0174at 226.312 kb on + strand, within PP_0174at 226.313 kb on - strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.398 kb on - strand, within PP_0174at 226.398 kb on - strandat 226.398 kb on - strand, within PP_0174at 226.398 kb on - strand, within PP_0174at 226.424 kb on - strand, within PP_0174at 226.511 kb on - strand, within PP_0174at 226.595 kb on + strandat 226.634 kb on - strandat 226.769 kb on + strandat 227.220 kb on + strandat 227.260 kb on - strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.314 kb on - strandat 227.314 kb on - strandat 227.511 kb on + strand, within PP_0176at 227.512 kb on - strand, within PP_0176at 227.512 kb on - strand, within PP_0176at 227.512 kb on - strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.535 kb on - strand, within PP_0176at 227.651 kb on + strand, within PP_0176at 227.652 kb on - strand, within PP_0176at 227.736 kb on + strand, within PP_0176at 227.737 kb on - strand, within PP_0176at 227.737 kb on - strand, within PP_0176at 227.796 kb on - strand, within PP_0176at 228.083 kb on + strand, within PP_0176

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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225,816 + -0.6
225,828 - +0.2
225,974 - PP_0174 0.24 +0.3
225,974 - PP_0174 0.24 +0.3
226,054 + PP_0174 0.34 +0.8
226,151 - PP_0174 0.46 -0.2
226,177 + PP_0174 0.49 +0.6
226,177 + PP_0174 0.49 -0.4
226,177 + PP_0174 0.49 -1.7
226,177 + PP_0174 0.49 +0.1
226,177 + PP_0174 0.49 -0.2
226,177 + PP_0174 0.49 -0.5
226,177 + PP_0174 0.49 -0.5
226,177 + PP_0174 0.49 -0.3
226,178 - PP_0174 0.49 -0.3
226,178 - PP_0174 0.49 +0.3
226,178 - PP_0174 0.49 -0.5
226,178 - PP_0174 0.49 +0.4
226,178 - PP_0174 0.49 +0.1
226,255 + PP_0174 0.59 +0.9
226,255 + PP_0174 0.59 +0.6
226,255 + PP_0174 0.59 -0.6
226,256 - PP_0174 0.59 -0.4
226,256 - PP_0174 0.59 +0.0
226,256 - -0.2
226,256 - PP_0174 0.59 +0.5
226,256 - PP_0174 0.59 -0.5
226,256 - PP_0174 0.59 -0.8
226,256 - PP_0174 0.59 +0.7
226,312 + PP_0174 0.66 -0.4
226,312 + PP_0174 0.66 +0.4
226,313 - PP_0174 0.66 -0.5
226,397 + PP_0174 0.76 -0.4
226,397 + PP_0174 0.76 -0.3
226,397 + PP_0174 0.76 -0.6
226,397 + PP_0174 0.76 -0.9
226,398 - PP_0174 0.76 +0.0
226,398 - -1.7
226,398 - PP_0174 0.76 +0.4
226,398 - PP_0174 0.76 +0.4
226,424 - PP_0174 0.79 -0.5
226,511 - PP_0174 0.90 +0.5
226,595 + +0.1
226,634 - +0.9
226,769 + +0.1
227,220 + -0.6
227,260 - +0.2
227,313 + +0.3
227,313 + -0.8
227,313 + +0.0
227,313 + -0.1
227,313 + +0.5
227,313 + +0.7
227,313 + -0.1
227,314 - +0.5
227,314 - -0.4
227,511 + PP_0176 0.16 +0.3
227,512 - PP_0176 0.16 -0.8
227,512 - PP_0176 0.16 +2.0
227,512 - PP_0176 0.16 +0.9
227,534 + PP_0176 0.17 +0.0
227,534 + PP_0176 0.17 -0.2
227,534 + PP_0176 0.17 -0.4
227,534 + PP_0176 0.17 -0.1
227,535 - PP_0176 0.17 +0.4
227,651 + PP_0176 0.23 +0.7
227,652 - PP_0176 0.23 -0.1
227,736 + PP_0176 0.27 +0.4
227,737 - PP_0176 0.27 -0.1
227,737 - PP_0176 0.27 -0.3
227,796 - PP_0176 0.30 +0.2
228,083 + PP_0176 0.43 +0.4

Or see this region's nucleotide sequence