Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0123 and PP_0124 are separated by 370 nucleotides PP_0124 and PP_0125 are separated by 201 nucleotides PP_0125 and PP_0126 are separated by 31 nucleotides
PP_0123: PP_0123 - DNA polymerase I, 5, at 127,523 to 130,270
_0123
PP_0124: PP_0124 - probable GTP-binding protein, at 130,641 to 131,273
_0124
PP_0125: PP_0125 - putative cytochrome c-type protein, at 131,475 to 131,777
_0125
PP_0126: PP_0126 - Cytochrome c4, at 131,809 to 132,426
_0126
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 129.779 kb on + strand, within PP_0123 at 129.779 kb on + strand, within PP_0123 at 129.780 kb on - strand, within PP_0123 at 129.842 kb on + strand, within PP_0123 at 129.842 kb on + strand, within PP_0123 at 129.842 kb on + strand, within PP_0123 at 129.842 kb on + strand, within PP_0123 at 129.843 kb on - strand, within PP_0123 at 129.843 kb on - strand, within PP_0123 at 129.843 kb on - strand, within PP_0123 at 129.844 kb on + strand, within PP_0123 at 129.845 kb on - strand, within PP_0123 at 129.845 kb on - strand, within PP_0123 at 129.845 kb on - strand at 129.845 kb on - strand, within PP_0123 at 129.854 kb on + strand, within PP_0123 at 129.884 kb on + strand, within PP_0123 at 129.885 kb on - strand, within PP_0123 at 129.885 kb on - strand, within PP_0123 at 129.953 kb on + strand, within PP_0123 at 129.954 kb on - strand, within PP_0123 at 130.071 kb on + strand at 130.075 kb on + strand at 130.075 kb on + strand at 130.076 kb on - strand at 130.146 kb on + strand at 130.147 kb on - strand at 130.291 kb on - strand at 130.304 kb on + strand at 130.305 kb on - strand at 130.345 kb on + strand at 130.345 kb on + strand at 130.346 kb on - strand at 130.346 kb on - strand at 130.370 kb on - strand at 130.390 kb on + strand at 130.391 kb on - strand at 130.391 kb on - strand at 130.415 kb on + strand at 130.449 kb on + strand at 130.449 kb on + strand at 130.449 kb on + strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.460 kb on - strand at 130.474 kb on - strand at 130.597 kb on + strand at 130.598 kb on - strand at 130.643 kb on - strand at 131.355 kb on - strand at 131.355 kb on - strand at 131.356 kb on + strand at 131.356 kb on + strand at 131.356 kb on + strand at 131.357 kb on - strand at 131.357 kb on - strand at 131.357 kb on - strand at 131.357 kb on - strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.358 kb on + strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.359 kb on - strand at 131.424 kb on - strand at 131.424 kb on - strand at 131.424 kb on - strand at 131.502 kb on - strand at 131.502 kb on - strand at 131.502 kb on - strand at 131.532 kb on - strand, within PP_0125 at 131.532 kb on - strand, within PP_0125 at 131.553 kb on + strand, within PP_0125 at 131.554 kb on - strand, within PP_0125 at 131.554 kb on - strand, within PP_0125 at 131.656 kb on + strand, within PP_0125 at 131.772 kb on - strand at 131.775 kb on + strand at 131.775 kb on + strand at 131.776 kb on - strand at 131.776 kb on - strand at 131.776 kb on - strand at 131.776 kb on - strand at 131.789 kb on + strand at 131.789 kb on + strand at 131.789 kb on + strand at 131.790 kb on - strand at 131.803 kb on + strand at 131.804 kb on - strand at 131.804 kb on - strand at 131.804 kb on - strand at 131.804 kb on - strand at 131.819 kb on + strand at 131.819 kb on + strand at 131.819 kb on + strand at 131.820 kb on - strand at 131.820 kb on - strand at 131.877 kb on + strand, within PP_0126 at 131.877 kb on + strand, within PP_0126 at 131.995 kb on + strand, within PP_0126 at 132.019 kb on - strand, within PP_0126 at 132.036 kb on + strand, within PP_0126 at 132.037 kb on - strand, within PP_0126 at 132.103 kb on + strand, within PP_0126
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 129,779 + PP_0123 0.82 +0.8 129,779 + PP_0123 0.82 -2.1 129,780 - PP_0123 0.82 +2.8 129,842 + PP_0123 0.84 -0.6 129,842 + PP_0123 0.84 -0.8 129,842 + PP_0123 0.84 +1.4 129,842 + PP_0123 0.84 +1.0 129,843 - PP_0123 0.84 -1.1 129,843 - PP_0123 0.84 +4.1 129,843 - PP_0123 0.84 -0.5 129,844 + PP_0123 0.84 +0.8 129,845 - PP_0123 0.84 +0.2 129,845 - PP_0123 0.84 -0.4 129,845 - +0.8 129,845 - PP_0123 0.84 +0.2 129,854 + PP_0123 0.85 +2.4 129,884 + PP_0123 0.86 +1.4 129,885 - PP_0123 0.86 -1.8 129,885 - PP_0123 0.86 +0.8 129,953 + PP_0123 0.88 +1.8 129,954 - PP_0123 0.88 +0.8 130,071 + +0.1 130,075 + +1.8 130,075 + -0.2 130,076 - +0.0 130,146 + +1.3 130,147 - +3.8 130,291 - +0.4 130,304 + +0.8 130,305 - +0.5 130,345 + -0.0 130,345 + +0.1 130,346 - +0.1 130,346 - +0.1 130,370 - +0.8 130,390 + -0.0 130,391 - +0.9 130,391 - +0.9 130,415 + -0.2 130,449 + -0.9 130,449 + -0.2 130,449 + -0.8 130,450 - -0.2 130,450 - +0.2 130,450 - -0.2 130,450 - +0.2 130,450 - +0.5 130,450 - +0.8 130,450 - +0.8 130,450 - -0.9 130,460 - -1.2 130,474 - +0.0 130,597 + +0.6 130,598 - -0.6 130,643 - +0.1 131,355 - -0.0 131,355 - -0.1 131,356 + +1.6 131,356 + +1.5 131,356 + -0.6 131,357 - -0.3 131,357 - -0.7 131,357 - -0.4 131,357 - -0.6 131,358 + +0.2 131,358 + -0.8 131,358 + -0.4 131,358 + -0.3 131,358 + -0.9 131,358 + -0.2 131,358 + +0.5 131,358 + +0.3 131,358 + +0.0 131,359 - +0.1 131,359 - +0.1 131,359 - -0.9 131,359 - +0.2 131,359 - -1.1 131,359 - +0.7 131,359 - -0.8 131,359 - -0.6 131,359 - +0.3 131,424 - -0.1 131,424 - +0.7 131,424 - +0.4 131,502 - +0.7 131,502 - -1.8 131,502 - +0.1 131,532 - PP_0125 0.19 -1.1 131,532 - PP_0125 0.19 +1.1 131,553 + PP_0125 0.26 +0.7 131,554 - PP_0125 0.26 +0.3 131,554 - PP_0125 0.26 +0.7 131,656 + PP_0125 0.60 -0.2 131,772 - -0.8 131,775 + -1.0 131,775 + +0.5 131,776 - +0.2 131,776 - -0.7 131,776 - +0.5 131,776 - -0.6 131,789 + +0.1 131,789 + -0.2 131,789 + -0.3 131,790 - +0.2 131,803 + -0.6 131,804 - -0.2 131,804 - -1.7 131,804 - +0.3 131,804 - -0.3 131,819 + +0.1 131,819 + +0.2 131,819 + -0.7 131,820 - +0.4 131,820 - -0.2 131,877 + PP_0126 0.11 -0.8 131,877 + PP_0126 0.11 +0.3 131,995 + PP_0126 0.30 -0.2 132,019 - PP_0126 0.34 +1.8 132,036 + PP_0126 0.37 +0.6 132,037 - PP_0126 0.37 +0.4 132,103 + PP_0126 0.48 +0.6
Or see this region's nucleotide sequence