Strain Fitness in Pseudomonas putida KT2440 around PP_0097

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0096 and PP_0097 overlap by 4 nucleotidesPP_0097 and PP_0098 are separated by 18 nucleotidesPP_0098 and PP_0099 are separated by 139 nucleotides PP_0096: PP_0096 - oligopeptidase A, at 101,181 to 103,232 _0096 PP_0097: PP_0097 - conserved protein of unknown function, at 103,229 to 103,510 _0097 PP_0098: PP_0098 - conserved protein of unknown function, at 103,529 to 103,702 _0098 PP_0099: PP_0099 - conserved protein of unknown function, at 103,842 to 104,900 _0099 Position (kb) 103 104Strain fitness (log2 ratio) -1 0 1 2 3at 102.358 kb on + strand, within PP_0096at 102.358 kb on + strandat 102.358 kb on + strand, within PP_0096at 102.358 kb on + strand, within PP_0096at 102.359 kb on - strand, within PP_0096at 102.359 kb on - strand, within PP_0096at 102.417 kb on + strand, within PP_0096at 102.417 kb on + strandat 102.747 kb on + strand, within PP_0096at 102.748 kb on - strand, within PP_0096at 102.895 kb on + strand, within PP_0096at 102.895 kb on + strand, within PP_0096at 102.895 kb on + strand, within PP_0096at 102.896 kb on - strand, within PP_0096at 102.951 kb on + strand, within PP_0096at 102.951 kb on + strand, within PP_0096at 102.951 kb on + strand, within PP_0096at 102.952 kb on - strand, within PP_0096at 103.011 kb on + strand, within PP_0096at 103.012 kb on - strand, within PP_0096at 103.012 kb on - strand, within PP_0096at 103.012 kb on - strand, within PP_0096at 103.012 kb on - strand, within PP_0096at 103.012 kb on - strand, within PP_0096at 103.017 kb on + strand, within PP_0096at 103.017 kb on + strand, within PP_0096at 103.017 kb on + strandat 103.018 kb on - strand, within PP_0096at 103.018 kb on - strand, within PP_0096at 103.018 kb on - strand, within PP_0096at 103.018 kb on - strand, within PP_0096at 103.018 kb on - strandat 103.239 kb on + strandat 103.239 kb on + strandat 103.239 kb on + strandat 103.240 kb on - strandat 103.240 kb on - strandat 103.240 kb on - strandat 103.367 kb on - strand, within PP_0097at 103.508 kb on + strandat 103.509 kb on - strandat 103.511 kb on + strandat 103.511 kb on + strandat 103.511 kb on + strandat 103.511 kb on + strandat 103.512 kb on - strandat 103.512 kb on - strandat 103.701 kb on - strandat 103.701 kb on - strandat 103.745 kb on + strandat 103.745 kb on + strandat 103.745 kb on + strandat 103.745 kb on + strandat 103.745 kb on + strandat 103.745 kb on + strandat 103.746 kb on - strandat 103.746 kb on - strandat 103.746 kb on - strandat 103.746 kb on - strandat 103.746 kb on - strandat 103.770 kb on - strandat 103.939 kb on - strandat 103.939 kb on - strandat 103.964 kb on + strand, within PP_0099at 104.076 kb on + strand, within PP_0099at 104.076 kb on + strand, within PP_0099at 104.076 kb on + strand, within PP_0099at 104.076 kb on + strand, within PP_0099at 104.076 kb on + strand, within PP_0099at 104.077 kb on - strand, within PP_0099at 104.077 kb on - strand, within PP_0099at 104.077 kb on - strand, within PP_0099at 104.077 kb on - strand, within PP_0099at 104.077 kb on - strand, within PP_0099at 104.077 kb on - strand, within PP_0099at 104.082 kb on + strand, within PP_0099at 104.082 kb on + strand, within PP_0099at 104.082 kb on + strand, within PP_0099at 104.083 kb on - strand, within PP_0099at 104.083 kb on - strand, within PP_0099at 104.083 kb on - strand, within PP_0099at 104.083 kb on - strand, within PP_0099at 104.083 kb on - strand, within PP_0099at 104.200 kb on - strand, within PP_0099at 104.266 kb on + strand, within PP_0099at 104.266 kb on + strand, within PP_0099at 104.293 kb on + strand, within PP_0099at 104.294 kb on - strand, within PP_0099

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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102,358 + PP_0096 0.57 -0.3
102,358 + +0.2
102,358 + PP_0096 0.57 +0.1
102,358 + PP_0096 0.57 +0.1
102,359 - PP_0096 0.57 +0.0
102,359 - PP_0096 0.57 +0.6
102,417 + PP_0096 0.60 +0.2
102,417 + -1.0
102,747 + PP_0096 0.76 +0.1
102,748 - PP_0096 0.76 +1.1
102,895 + PP_0096 0.84 -0.3
102,895 + PP_0096 0.84 -0.9
102,895 + PP_0096 0.84 +0.3
102,896 - PP_0096 0.84 -0.3
102,951 + PP_0096 0.86 +0.0
102,951 + PP_0096 0.86 +1.3
102,951 + PP_0096 0.86 +0.4
102,952 - PP_0096 0.86 -0.6
103,011 + PP_0096 0.89 -0.3
103,012 - PP_0096 0.89 +0.4
103,012 - PP_0096 0.89 -1.1
103,012 - PP_0096 0.89 +0.7
103,012 - PP_0096 0.89 +0.5
103,012 - PP_0096 0.89 +0.7
103,017 + PP_0096 0.89 +0.2
103,017 + PP_0096 0.89 -0.0
103,017 + +0.8
103,018 - PP_0096 0.90 -1.0
103,018 - PP_0096 0.90 +0.9
103,018 - PP_0096 0.90 +0.2
103,018 - PP_0096 0.90 +0.5
103,018 - +2.8
103,239 + +0.0
103,239 + +0.2
103,239 + +0.4
103,240 - -0.8
103,240 - -0.8
103,240 - +0.8
103,367 - PP_0097 0.49 +2.2
103,508 + +0.5
103,509 - -0.6
103,511 + -0.6
103,511 + -0.5
103,511 + +0.4
103,511 + +0.0
103,512 - +0.7
103,512 - +0.3
103,701 - +0.4
103,701 - -0.3
103,745 + +0.1
103,745 + +0.3
103,745 + -0.3
103,745 + +0.6
103,745 + -0.1
103,745 + +0.6
103,746 - +0.1
103,746 - -0.7
103,746 - +0.0
103,746 - -0.6
103,746 - -0.1
103,770 - -0.6
103,939 - +0.6
103,939 - +0.7
103,964 + PP_0099 0.12 -0.5
104,076 + PP_0099 0.22 -0.1
104,076 + PP_0099 0.22 -0.3
104,076 + PP_0099 0.22 -0.0
104,076 + PP_0099 0.22 +0.7
104,076 + PP_0099 0.22 +0.5
104,077 - PP_0099 0.22 +0.6
104,077 - PP_0099 0.22 +0.0
104,077 - PP_0099 0.22 +0.2
104,077 - PP_0099 0.22 -0.4
104,077 - PP_0099 0.22 +0.2
104,077 - PP_0099 0.22 -0.8
104,082 + PP_0099 0.23 +0.3
104,082 + PP_0099 0.23 -0.0
104,082 + PP_0099 0.23 +0.4
104,083 - PP_0099 0.23 +0.2
104,083 - PP_0099 0.23 +0.8
104,083 - PP_0099 0.23 -0.5
104,083 - PP_0099 0.23 +0.4
104,083 - PP_0099 0.23 -0.2
104,200 - PP_0099 0.34 -0.7
104,266 + PP_0099 0.40 +0.2
104,266 + PP_0099 0.40 +0.4
104,293 + PP_0099 0.43 +0.4
104,294 - PP_0099 0.43 +0.0

Or see this region's nucleotide sequence