Strain Fitness in Pseudomonas putida KT2440 around PP_0032

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0030 and PP_0031 are separated by 57 nucleotidesPP_0031 and PP_0032 are separated by 266 nucleotidesPP_0032 and PP_0033 are separated by 82 nucleotides PP_0030: PP_0030 - metal-sensor histidine kinase, at 33,564 to 34,982 _0030 PP_0031: PP_0031 - hypothetical protein, at 35,040 to 35,627 _0031 PP_0032: PP_0032 - conserved hypothetical protein, at 35,894 to 36,115 _0032 PP_0033: PP_0033 - putative undecaprenyl-glycosyl transferase, at 36,198 to 37,652 _0033 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 34.980 kb on + strandat 34.999 kb on + strandat 34.999 kb on + strandat 34.999 kb on + strandat 35.090 kb on + strandat 35.091 kb on - strandat 35.091 kb on - strandat 35.094 kb on - strandat 35.140 kb on + strand, within PP_0031at 35.140 kb on + strand, within PP_0031at 35.141 kb on - strand, within PP_0031at 35.141 kb on - strand, within PP_0031at 35.141 kb on - strand, within PP_0031at 35.169 kb on + strand, within PP_0031at 35.169 kb on + strand, within PP_0031at 35.169 kb on + strand, within PP_0031at 35.170 kb on - strand, within PP_0031at 35.170 kb on - strand, within PP_0031at 35.170 kb on - strand, within PP_0031at 35.257 kb on + strand, within PP_0031at 35.257 kb on + strand, within PP_0031at 35.258 kb on - strand, within PP_0031at 35.258 kb on - strandat 35.258 kb on - strand, within PP_0031at 35.297 kb on + strand, within PP_0031at 35.298 kb on - strand, within PP_0031at 35.327 kb on + strand, within PP_0031at 35.327 kb on + strand, within PP_0031at 35.328 kb on - strand, within PP_0031at 35.384 kb on - strand, within PP_0031at 35.616 kb on + strandat 35.617 kb on - strandat 35.617 kb on - strandat 35.797 kb on + strandat 35.860 kb on - strandat 35.877 kb on - strandat 35.877 kb on - strandat 36.094 kb on + strandat 36.199 kb on + strandat 36.327 kb on + strandat 36.327 kb on + strandat 36.327 kb on + strandat 36.328 kb on - strandat 36.328 kb on - strandat 36.328 kb on - strandat 36.328 kb on - strandat 36.376 kb on + strand, within PP_0033at 36.376 kb on + strand, within PP_0033at 36.376 kb on + strand, within PP_0033at 36.376 kb on + strand, within PP_0033at 36.377 kb on - strand, within PP_0033at 36.454 kb on + strand, within PP_0033at 36.455 kb on - strand, within PP_0033at 36.472 kb on + strand, within PP_0033at 36.473 kb on - strand, within PP_0033at 36.473 kb on - strand, within PP_0033at 36.473 kb on - strand, within PP_0033at 36.552 kb on + strand, within PP_0033at 36.553 kb on - strand, within PP_0033at 36.553 kb on - strand, within PP_0033at 36.553 kb on - strand, within PP_0033at 36.565 kb on + strand, within PP_0033at 36.695 kb on - strand, within PP_0033at 36.695 kb on - strand, within PP_0033at 36.695 kb on - strand, within PP_0033at 36.695 kb on - strand, within PP_0033at 36.760 kb on + strand, within PP_0033at 36.761 kb on - strand, within PP_0033at 36.761 kb on - strand, within PP_0033at 36.761 kb on - strandat 36.807 kb on + strand, within PP_0033at 36.808 kb on - strand, within PP_0033at 36.808 kb on - strand, within PP_0033at 36.828 kb on + strand, within PP_0033at 36.863 kb on - strand, within PP_0033at 36.881 kb on + strand, within PP_0033at 36.882 kb on - strand, within PP_0033at 36.882 kb on - strand, within PP_0033at 36.882 kb on - strand, within PP_0033at 36.886 kb on + strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.906 kb on - strand, within PP_0033at 36.906 kb on - strand, within PP_0033at 36.946 kb on + strand, within PP_0033at 36.946 kb on + strand, within PP_0033at 36.946 kb on + strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.999 kb on + strand, within PP_0033at 37.000 kb on - strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.002 kb on - strand, within PP_0033at 37.002 kb on - strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.015 kb on - strand, within PP_0033at 37.015 kb on - strand, within PP_0033at 37.015 kb on - strand, within PP_0033at 37.044 kb on + strand, within PP_0033at 37.064 kb on - strand, within PP_0033at 37.064 kb on - strand, within PP_0033at 37.067 kb on + strand, within PP_0033at 37.068 kb on - strand, within PP_0033

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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34,980 + -0.9
34,999 + +0.1
34,999 + -0.9
34,999 + +0.1
35,090 + -0.1
35,091 - -0.6
35,091 - -0.8
35,094 - -0.6
35,140 + PP_0031 0.17 -0.0
35,140 + PP_0031 0.17 -0.5
35,141 - PP_0031 0.17 -0.2
35,141 - PP_0031 0.17 +0.4
35,141 - PP_0031 0.17 +0.6
35,169 + PP_0031 0.22 +0.0
35,169 + PP_0031 0.22 +0.6
35,169 + PP_0031 0.22 -0.5
35,170 - PP_0031 0.22 -0.3
35,170 - PP_0031 0.22 -0.9
35,170 - PP_0031 0.22 -0.5
35,257 + PP_0031 0.37 +0.2
35,257 + PP_0031 0.37 +1.3
35,258 - PP_0031 0.37 -0.1
35,258 - -0.2
35,258 - PP_0031 0.37 -0.5
35,297 + PP_0031 0.44 -0.5
35,298 - PP_0031 0.44 -0.4
35,327 + PP_0031 0.49 -0.3
35,327 + PP_0031 0.49 -1.3
35,328 - PP_0031 0.49 +0.0
35,384 - PP_0031 0.59 +0.3
35,616 + -0.7
35,617 - -0.6
35,617 - -0.4
35,797 + +0.2
35,860 - +0.6
35,877 - -0.1
35,877 - +0.4
36,094 + +0.2
36,199 + -0.4
36,327 + -0.8
36,327 + -0.0
36,327 + -0.8
36,328 - +0.8
36,328 - -1.0
36,328 - +0.8
36,328 - +1.4
36,376 + PP_0033 0.12 -0.6
36,376 + PP_0033 0.12 -0.1
36,376 + PP_0033 0.12 -0.6
36,376 + PP_0033 0.12 +0.1
36,377 - PP_0033 0.12 -0.6
36,454 + PP_0033 0.18 -0.2
36,455 - PP_0033 0.18 +0.0
36,472 + PP_0033 0.19 -0.4
36,473 - PP_0033 0.19 +0.7
36,473 - PP_0033 0.19 -0.6
36,473 - PP_0033 0.19 +0.6
36,552 + PP_0033 0.24 +0.0
36,553 - PP_0033 0.24 +0.5
36,553 - PP_0033 0.24 -0.9
36,553 - PP_0033 0.24 -0.2
36,565 + PP_0033 0.25 -0.1
36,695 - PP_0033 0.34 +0.2
36,695 - PP_0033 0.34 +0.3
36,695 - PP_0033 0.34 -0.9
36,695 - PP_0033 0.34 +0.3
36,760 + PP_0033 0.39 +0.4
36,761 - PP_0033 0.39 -0.2
36,761 - PP_0033 0.39 +0.3
36,761 - +0.8
36,807 + PP_0033 0.42 -1.0
36,808 - PP_0033 0.42 +1.7
36,808 - PP_0033 0.42 +1.6
36,828 + PP_0033 0.43 +1.0
36,863 - PP_0033 0.46 +0.3
36,881 + PP_0033 0.47 -0.2
36,882 - PP_0033 0.47 +0.5
36,882 - PP_0033 0.47 -0.7
36,882 - PP_0033 0.47 +0.2
36,886 + PP_0033 0.47 -0.3
36,887 - PP_0033 0.47 -0.2
36,887 - PP_0033 0.47 +0.2
36,887 - PP_0033 0.47 +0.3
36,887 - PP_0033 0.47 -0.2
36,887 - PP_0033 0.47 -0.1
36,887 - PP_0033 0.47 -1.0
36,906 - PP_0033 0.49 +0.5
36,906 - PP_0033 0.49 +0.5
36,946 + PP_0033 0.51 +0.3
36,946 + PP_0033 0.51 +0.0
36,946 + PP_0033 0.51 -0.6
36,947 - PP_0033 0.51 -0.0
36,947 - PP_0033 0.51 +0.5
36,947 - PP_0033 0.51 -1.5
36,947 - PP_0033 0.51 -0.0
36,947 - PP_0033 0.51 +1.0
36,985 + PP_0033 0.54 +0.1
36,985 + PP_0033 0.54 -1.6
36,985 + PP_0033 0.54 -0.5
36,985 + PP_0033 0.54 +0.3
36,985 + PP_0033 0.54 +0.2
36,985 + PP_0033 0.54 -0.5
36,985 + PP_0033 0.54 -0.0
36,986 - PP_0033 0.54 +0.5
36,986 - PP_0033 0.54 -0.8
36,986 - PP_0033 0.54 -0.2
36,986 - PP_0033 0.54 -0.5
36,986 - PP_0033 0.54 -0.2
36,986 - PP_0033 0.54 +0.2
36,986 - PP_0033 0.54 -2.3
36,986 - PP_0033 0.54 -0.3
36,999 + PP_0033 0.55 +1.3
37,000 - PP_0033 0.55 +0.6
37,001 + PP_0033 0.55 +0.3
37,001 + PP_0033 0.55 -0.4
37,001 + PP_0033 0.55 -0.4
37,001 + PP_0033 0.55 -0.1
37,002 - PP_0033 0.55 +0.3
37,002 - PP_0033 0.55 -0.7
37,014 + PP_0033 0.56 -2.0
37,014 + PP_0033 0.56 -0.3
37,014 + PP_0033 0.56 +0.3
37,014 + PP_0033 0.56 -0.2
37,014 + PP_0033 0.56 +0.1
37,015 - PP_0033 0.56 -0.5
37,015 - PP_0033 0.56 -0.0
37,015 - PP_0033 0.56 +0.2
37,044 + PP_0033 0.58 -0.6
37,064 - PP_0033 0.60 -0.2
37,064 - PP_0033 0.60 +0.3
37,067 + PP_0033 0.60 +0.3
37,068 - PP_0033 0.60 +0.4

Or see this region's nucleotide sequence