Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0012 and PP_0013 are separated by 4 nucleotides PP_0013 and PP_5421 are separated by 838 nucleotides
PP_0012: PP_0012 - DNA replication and repair protein, at 12,222 to 13,325
_0012
PP_0013: PP_0013 - DNA gyrase subunit B, at 13,330 to 15,750
_0013
PP_5421: PP_5421 - conserved protein of unknown function, at 16,589 to 17,227
_5421
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 12.401 kb on + strand, within PP_0012 at 12.408 kb on + strand, within PP_0012 at 12.425 kb on + strand, within PP_0012 at 12.425 kb on + strand, within PP_0012 at 12.425 kb on + strand, within PP_0012 at 12.425 kb on + strand, within PP_0012 at 12.425 kb on + strand, within PP_0012 at 12.426 kb on - strand, within PP_0012 at 12.426 kb on - strand, within PP_0012 at 12.426 kb on - strand, within PP_0012 at 12.426 kb on - strand, within PP_0012 at 12.462 kb on - strand, within PP_0012 at 12.503 kb on + strand at 12.503 kb on + strand, within PP_0012 at 12.503 kb on + strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.504 kb on - strand, within PP_0012 at 12.556 kb on + strand, within PP_0012 at 12.556 kb on + strand, within PP_0012 at 12.556 kb on + strand, within PP_0012 at 12.728 kb on + strand, within PP_0012 at 12.885 kb on + strand, within PP_0012 at 12.965 kb on + strand, within PP_0012 at 13.118 kb on + strand, within PP_0012 at 13.118 kb on + strand, within PP_0012 at 13.118 kb on + strand, within PP_0012 at 13.118 kb on + strand, within PP_0012 at 13.118 kb on + strand, within PP_0012 at 13.118 kb on + strand, within PP_0012 at 13.118 kb on + strand, within PP_0012 at 13.122 kb on + strand, within PP_0012 at 13.122 kb on + strand, within PP_0012 at 13.122 kb on + strand, within PP_0012 at 13.122 kb on + strand, within PP_0012 at 13.222 kb on + strand at 13.222 kb on + strand at 15.760 kb on + strand at 15.760 kb on + strand at 15.760 kb on + strand at 15.760 kb on + strand at 15.760 kb on + strand at 15.761 kb on - strand at 15.761 kb on - strand at 15.761 kb on - strand at 15.793 kb on + strand at 15.793 kb on + strand at 15.794 kb on - strand at 16.155 kb on - strand at 16.270 kb on - strand at 16.389 kb on + strand at 16.389 kb on + strand at 16.472 kb on + strand at 16.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 12,401 + PP_0012 0.16 +0.2 12,408 + PP_0012 0.17 -0.1 12,425 + PP_0012 0.18 +0.3 12,425 + PP_0012 0.18 -0.5 12,425 + PP_0012 0.18 -0.3 12,425 + PP_0012 0.18 +0.1 12,425 + PP_0012 0.18 -0.5 12,426 - PP_0012 0.18 -0.1 12,426 - PP_0012 0.18 -0.1 12,426 - PP_0012 0.18 +0.5 12,426 - PP_0012 0.18 +0.6 12,462 - PP_0012 0.22 -0.3 12,503 + -0.6 12,503 + PP_0012 0.25 +0.6 12,503 + PP_0012 0.25 +0.3 12,504 - PP_0012 0.26 +0.6 12,504 - PP_0012 0.26 -0.9 12,504 - PP_0012 0.26 -0.5 12,504 - PP_0012 0.26 -0.2 12,504 - PP_0012 0.26 -0.3 12,504 - PP_0012 0.26 +0.3 12,504 - PP_0012 0.26 +0.1 12,504 - PP_0012 0.26 -0.1 12,504 - PP_0012 0.26 +0.7 12,504 - PP_0012 0.26 -0.1 12,556 + PP_0012 0.30 -1.0 12,556 + PP_0012 0.30 -0.7 12,556 + PP_0012 0.30 -0.0 12,728 + PP_0012 0.46 +0.3 12,885 + PP_0012 0.60 +0.1 12,965 + PP_0012 0.67 +0.1 13,118 + PP_0012 0.81 +1.2 13,118 + PP_0012 0.81 -0.5 13,118 + PP_0012 0.81 -0.5 13,118 + PP_0012 0.81 +0.9 13,118 + PP_0012 0.81 -0.4 13,118 + PP_0012 0.81 -0.0 13,118 + PP_0012 0.81 -0.6 13,122 + PP_0012 0.82 +1.3 13,122 + PP_0012 0.82 +1.4 13,122 + PP_0012 0.82 -1.3 13,122 + PP_0012 0.82 +2.0 13,222 + +0.1 13,222 + -0.6 15,760 + +0.6 15,760 + -0.7 15,760 + -0.6 15,760 + +0.6 15,760 + +0.8 15,761 - +0.8 15,761 - -1.1 15,761 - +1.2 15,793 + +0.1 15,793 + -0.1 15,794 - -0.6 16,155 - +0.0 16,270 - +0.2 16,389 + +0.4 16,389 + -0.1 16,472 + -0.8 16,597 - +4.1
Or see this region's nucleotide sequence