Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3635 and Atu8111.1 are separated by 95 nucleotides Atu8111.1 and Atu8111.2 are separated by 237 nucleotides Atu8111.2 and Atu3636 are separated by 324 nucleotides Atu3636 and Atu3637 are separated by 157 nucleotides
Atu3635: Atu3635 - amidohydrolase, at 687,389 to 688,552
Atu3635
Atu8111.1: Atu8111.1 - tRNA-Arg, at 688,648 to 688,684
Atu8111.1
Atu8111.2: Atu8111.2 - tRNA-Arg, at 688,922 to 688,961
Atu8111.2
Atu3636: Atu3636 - hypothetical protein, at 689,286 to 689,732
Atu3636
Atu3637: Atu3637 - 30S ribosomal protein S21, at 689,890 to 690,120
Atu3637
Position (kb) 688
689 Strain fitness (log2 ratio) -1
0
1 at 687.970 kb on - strand, within Atu3635 at 687.989 kb on + strand, within Atu3635 at 688.073 kb on - strand, within Atu3635 at 688.085 kb on + strand, within Atu3635 at 688.093 kb on - strand, within Atu3635 at 688.226 kb on + strand, within Atu3635 at 688.227 kb on + strand, within Atu3635 at 688.227 kb on + strand, within Atu3635 at 688.235 kb on - strand, within Atu3635 at 688.273 kb on + strand, within Atu3635 at 688.273 kb on + strand, within Atu3635 at 688.273 kb on + strand, within Atu3635 at 688.281 kb on - strand, within Atu3635 at 688.287 kb on + strand, within Atu3635 at 688.348 kb on + strand, within Atu3635 at 688.348 kb on + strand, within Atu3635 at 688.356 kb on - strand, within Atu3635 at 688.356 kb on - strand, within Atu3635 at 688.356 kb on - strand, within Atu3635 at 688.508 kb on + strand at 688.518 kb on + strand at 688.518 kb on + strand at 688.518 kb on + strand at 688.526 kb on - strand at 688.526 kb on - strand at 688.526 kb on - strand at 689.010 kb on + strand at 689.066 kb on - strand at 689.125 kb on + strand at 689.233 kb on - strand at 689.291 kb on - strand at 689.388 kb on + strand, within Atu3636 at 689.448 kb on + strand, within Atu3636 at 689.458 kb on + strand, within Atu3636 at 689.561 kb on + strand, within Atu3636 at 689.564 kb on - strand, within Atu3636 at 689.564 kb on - strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.574 kb on - strand, within Atu3636 at 689.574 kb on - strand, within Atu3636 at 689.596 kb on - strand, within Atu3636 at 689.606 kb on - strand, within Atu3636 at 689.606 kb on - strand, within Atu3636 at 689.683 kb on - strand, within Atu3636 at 689.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 687,970 - Atu3635 0.50 -0.3 687,989 + Atu3635 0.52 +0.0 688,073 - Atu3635 0.59 +0.4 688,085 + Atu3635 0.60 +0.3 688,093 - Atu3635 0.60 -0.0 688,226 + Atu3635 0.72 -1.0 688,227 + Atu3635 0.72 -0.1 688,227 + Atu3635 0.72 +0.2 688,235 - Atu3635 0.73 -0.3 688,273 + Atu3635 0.76 +0.3 688,273 + Atu3635 0.76 +0.3 688,273 + Atu3635 0.76 +0.2 688,281 - Atu3635 0.77 -1.4 688,287 + Atu3635 0.77 -0.0 688,348 + Atu3635 0.82 +0.1 688,348 + Atu3635 0.82 -1.0 688,356 - Atu3635 0.83 -0.4 688,356 - Atu3635 0.83 +0.3 688,356 - Atu3635 0.83 -0.7 688,508 + +0.2 688,518 + +0.3 688,518 + +0.2 688,518 + +0.1 688,526 - -1.1 688,526 - -0.1 688,526 - +0.3 689,010 + -1.0 689,066 - -0.4 689,125 + -0.1 689,233 - -0.9 689,291 - -0.0 689,388 + Atu3636 0.23 +0.1 689,448 + Atu3636 0.36 -0.2 689,458 + Atu3636 0.38 +0.1 689,561 + Atu3636 0.62 +0.1 689,564 - Atu3636 0.62 +0.2 689,564 - Atu3636 0.62 -0.6 689,566 + Atu3636 0.63 +0.2 689,566 + Atu3636 0.63 +0.8 689,566 + Atu3636 0.63 +0.1 689,566 + Atu3636 0.63 +0.1 689,566 + Atu3636 0.63 -0.1 689,566 + Atu3636 0.63 -1.2 689,574 - Atu3636 0.64 +0.1 689,574 - Atu3636 0.64 +0.6 689,596 - Atu3636 0.69 -0.1 689,606 - Atu3636 0.72 -0.2 689,606 - Atu3636 0.72 +0.5 689,683 - Atu3636 0.89 +0.1 689,880 - +0.1
Or see this region's nucleotide sequence