Strain Fitness in Agrobacterium fabrum C58 around Atu6179

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6178 and Atu6179 are separated by 141 nucleotidesAtu6179 and Atu6180 are separated by 2 nucleotidesAtu6180 and Atu6181 are separated by 270 nucleotides Atu6178: Atu6178 - two component response regulator, at 193,546 to 194,307 Atu6178 Atu6179: Atu6179 - virA/G regulated protein, at 194,449 to 195,057 Atu6179 Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755 Atu6180 Atu6181: Atu6181 - virA/G regulated topoisomerase, at 196,026 to 196,469 Atu6181 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2 3at 193.456 kb on - strandat 193.478 kb on - strandat 193.492 kb on + strandat 193.537 kb on - strandat 193.574 kb on - strandat 193.655 kb on + strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.696 kb on + strand, within Atu6178at 193.696 kb on + strand, within Atu6178at 193.707 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.895 kb on - strand, within Atu6178at 193.917 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.987 kb on + strand, within Atu6178at 194.031 kb on + strand, within Atu6178at 194.040 kb on + strand, within Atu6178at 194.041 kb on - strand, within Atu6178at 194.046 kb on + strand, within Atu6178at 194.060 kb on + strand, within Atu6178at 194.061 kb on + strand, within Atu6178at 194.108 kb on + strand, within Atu6178at 194.108 kb on + strand, within Atu6178at 194.109 kb on - strand, within Atu6178at 194.109 kb on - strand, within Atu6178at 194.129 kb on + strand, within Atu6178at 194.146 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on - strand, within Atu6178at 194.152 kb on - strand, within Atu6178at 194.157 kb on - strand, within Atu6178at 194.165 kb on + strand, within Atu6178at 194.173 kb on - strand, within Atu6178at 194.216 kb on - strand, within Atu6178at 194.219 kb on + strand, within Atu6178at 194.219 kb on + strand, within Atu6178at 194.227 kb on - strand, within Atu6178at 194.227 kb on - strand, within Atu6178at 194.237 kb on - strandat 194.246 kb on + strandat 194.269 kb on + strandat 194.302 kb on + strandat 194.317 kb on + strandat 194.385 kb on + strandat 194.385 kb on + strandat 194.404 kb on + strandat 194.409 kb on + strandat 194.412 kb on - strandat 194.431 kb on + strandat 194.437 kb on + strandat 194.439 kb on - strandat 194.453 kb on - strandat 194.568 kb on + strand, within Atu6179at 194.647 kb on - strand, within Atu6179at 194.669 kb on + strand, within Atu6179at 194.702 kb on - strand, within Atu6179at 194.728 kb on + strand, within Atu6179at 194.804 kb on - strand, within Atu6179at 194.868 kb on + strand, within Atu6179at 194.868 kb on + strand, within Atu6179at 194.876 kb on - strand, within Atu6179at 194.896 kb on + strand, within Atu6179at 194.904 kb on - strand, within Atu6179at 194.904 kb on - strand, within Atu6179at 195.040 kb on - strandat 195.059 kb on - strandat 195.066 kb on + strandat 195.066 kb on + strandat 195.074 kb on - strandat 195.074 kb on - strandat 195.074 kb on - strandat 195.104 kb on - strandat 195.165 kb on - strand, within Atu6180at 195.237 kb on - strand, within Atu6180at 195.239 kb on + strand, within Atu6180at 195.245 kb on - strand, within Atu6180at 195.272 kb on - strand, within Atu6180at 195.318 kb on - strand, within Atu6180at 195.326 kb on - strand, within Atu6180at 195.415 kb on - strand, within Atu6180at 195.415 kb on - strand, within Atu6180at 195.415 kb on - strand, within Atu6180at 195.418 kb on + strand, within Atu6180at 195.434 kb on + strand, within Atu6180at 195.434 kb on + strand, within Atu6180at 195.434 kb on + strand, within Atu6180at 195.442 kb on - strand, within Atu6180at 195.452 kb on - strand, within Atu6180at 195.476 kb on - strand, within Atu6180at 195.523 kb on - strand, within Atu6180at 195.525 kb on + strand, within Atu6180at 195.533 kb on - strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.536 kb on + strand, within Atu6180at 195.569 kb on - strand, within Atu6180at 195.589 kb on + strand, within Atu6180at 195.589 kb on - strand, within Atu6180at 195.589 kb on - strand, within Atu6180at 195.633 kb on + strand, within Atu6180at 195.700 kb on - strandat 195.993 kb on + strandat 196.036 kb on + strandat 196.037 kb on - strandat 196.044 kb on - strandat 196.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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193,456 - +0.2
193,478 - +0.2
193,492 + +0.1
193,537 - -1.1
193,574 - +0.3
193,655 + Atu6178 0.14 -0.3
193,663 - Atu6178 0.15 -0.3
193,663 - Atu6178 0.15 +0.0
193,663 - Atu6178 0.15 -0.4
193,696 + Atu6178 0.20 +1.3
193,696 + Atu6178 0.20 -0.2
193,707 - Atu6178 0.21 +0.0
193,714 - Atu6178 0.22 +0.5
193,714 - Atu6178 0.22 +0.4
193,714 - Atu6178 0.22 -0.1
193,895 - Atu6178 0.46 +0.2
193,917 + Atu6178 0.49 +0.3
193,941 + Atu6178 0.52 -0.2
193,941 + Atu6178 0.52 -0.1
193,941 + Atu6178 0.52 -0.0
193,941 + Atu6178 0.52 -0.5
193,949 - Atu6178 0.53 -0.8
193,949 - Atu6178 0.53 +0.2
193,949 - Atu6178 0.53 -0.1
193,987 + Atu6178 0.58 +0.1
194,031 + Atu6178 0.64 +0.7
194,040 + Atu6178 0.65 -0.2
194,041 - Atu6178 0.65 +1.7
194,046 + Atu6178 0.66 -0.9
194,060 + Atu6178 0.67 +0.1
194,061 + Atu6178 0.68 -0.4
194,108 + Atu6178 0.74 +0.0
194,108 + Atu6178 0.74 -1.5
194,109 - Atu6178 0.74 +0.3
194,109 - Atu6178 0.74 -2.1
194,129 + Atu6178 0.77 +0.6
194,146 + Atu6178 0.79 -0.1
194,152 + Atu6178 0.80 -0.9
194,152 + Atu6178 0.80 +3.4
194,152 + Atu6178 0.80 +0.5
194,152 - Atu6178 0.80 -0.3
194,152 - Atu6178 0.80 +0.1
194,157 - Atu6178 0.80 -0.0
194,165 + Atu6178 0.81 +1.4
194,173 - Atu6178 0.82 -0.2
194,216 - Atu6178 0.88 -0.4
194,219 + Atu6178 0.88 +0.1
194,219 + Atu6178 0.88 +0.3
194,227 - Atu6178 0.89 +0.2
194,227 - Atu6178 0.89 +0.5
194,237 - -1.0
194,246 + -0.1
194,269 + +0.9
194,302 + +0.5
194,317 + -0.4
194,385 + +0.2
194,385 + +0.2
194,404 + -0.3
194,409 + -0.1
194,412 - -0.3
194,431 + -0.3
194,437 + +1.6
194,439 - +0.1
194,453 - -1.1
194,568 + Atu6179 0.20 -0.1
194,647 - Atu6179 0.33 -1.6
194,669 + Atu6179 0.36 +1.6
194,702 - Atu6179 0.42 +1.5
194,728 + Atu6179 0.46 +0.2
194,804 - Atu6179 0.58 +0.3
194,868 + Atu6179 0.69 +0.1
194,868 + Atu6179 0.69 -0.0
194,876 - Atu6179 0.70 -0.4
194,896 + Atu6179 0.73 +0.8
194,904 - Atu6179 0.75 +1.0
194,904 - Atu6179 0.75 +0.1
195,040 - -1.5
195,059 - +1.9
195,066 + +0.4
195,066 + +0.0
195,074 - -1.1
195,074 - -0.1
195,074 - +1.1
195,104 - -0.2
195,165 - Atu6180 0.15 +0.1
195,237 - Atu6180 0.25 -2.2
195,239 + Atu6180 0.26 +0.4
195,245 - Atu6180 0.27 +0.4
195,272 - Atu6180 0.30 +1.1
195,318 - Atu6180 0.37 +0.5
195,326 - Atu6180 0.38 -0.1
195,415 - Atu6180 0.51 -0.2
195,415 - Atu6180 0.51 -0.6
195,415 - Atu6180 0.51 +0.4
195,418 + Atu6180 0.51 -0.7
195,434 + Atu6180 0.54 +0.8
195,434 + Atu6180 0.54 -1.5
195,434 + Atu6180 0.54 +0.1
195,442 - Atu6180 0.55 -0.1
195,452 - Atu6180 0.56 +0.0
195,476 - Atu6180 0.60 +0.1
195,523 - Atu6180 0.67 -0.5
195,525 + Atu6180 0.67 +0.2
195,533 - Atu6180 0.68 -0.5
195,535 + Atu6180 0.68 +0.3
195,535 + Atu6180 0.68 +0.3
195,535 + Atu6180 0.68 +0.1
195,535 + Atu6180 0.68 -1.1
195,536 + Atu6180 0.68 -0.3
195,569 - Atu6180 0.73 -0.0
195,589 + Atu6180 0.76 +0.0
195,589 - Atu6180 0.76 +0.1
195,589 - Atu6180 0.76 +0.4
195,633 + Atu6180 0.82 +0.1
195,700 - -0.4
195,993 + -0.5
196,036 + +0.3
196,037 - -0.3
196,044 - +0.2
196,048 + +1.3

Or see this region's nucleotide sequence