Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5447 and Atu5448 are separated by 235 nucleotides Atu5448 and Atu5449 are separated by 300 nucleotides Atu5449 and Atu5450 are separated by 62 nucleotides Atu5450 and Atu5451 are separated by 137 nucleotides
Atu5447: Atu5447 - zinc-binding oxidoreductase, at 440,268 to 441,272
Atu5447
Atu5448: Atu5448 - hypothetical protein, at 441,508 to 441,768
Atu5448
Atu5449: Atu5449 - heat-shock protein, at 442,069 to 442,545
Atu5449
Atu5450: Atu5450 - hypothetical protein, at 442,608 to 442,907
Atu5450
Atu5451: Atu5451 - hypothetical protein, at 443,045 to 443,251
Atu5451
Position (kb) 442
443 Strain fitness (log2 ratio) -1
0
1
2 at 441.086 kb on + strand, within Atu5447 at 441.099 kb on - strand, within Atu5447 at 441.109 kb on - strand, within Atu5447 at 441.223 kb on - strand at 441.242 kb on + strand at 441.242 kb on + strand at 441.248 kb on + strand at 441.250 kb on - strand at 441.250 kb on - strand at 441.250 kb on - strand at 441.254 kb on + strand at 441.371 kb on - strand at 441.443 kb on + strand at 441.443 kb on + strand at 441.517 kb on - strand at 441.529 kb on - strand at 441.598 kb on - strand, within Atu5448 at 441.598 kb on - strand, within Atu5448 at 441.598 kb on - strand, within Atu5448 at 441.600 kb on + strand, within Atu5448 at 441.600 kb on + strand, within Atu5448 at 441.600 kb on + strand, within Atu5448 at 441.600 kb on + strand, within Atu5448 at 441.608 kb on - strand, within Atu5448 at 441.622 kb on - strand, within Atu5448 at 441.749 kb on - strand at 441.841 kb on + strand at 441.847 kb on - strand at 441.847 kb on - strand at 441.868 kb on + strand at 441.876 kb on - strand at 441.944 kb on + strand at 441.952 kb on - strand at 441.994 kb on + strand at 441.994 kb on + strand at 442.002 kb on - strand at 442.034 kb on - strand at 442.046 kb on - strand at 442.059 kb on + strand at 442.059 kb on + strand at 442.059 kb on + strand at 442.073 kb on - strand at 442.078 kb on + strand at 442.080 kb on - strand at 442.093 kb on + strand at 442.191 kb on + strand, within Atu5449 at 442.265 kb on - strand, within Atu5449 at 442.279 kb on + strand, within Atu5449 at 442.286 kb on - strand, within Atu5449 at 442.323 kb on - strand, within Atu5449 at 442.352 kb on + strand, within Atu5449 at 442.391 kb on - strand, within Atu5449 at 442.500 kb on + strand at 442.606 kb on - strand at 442.673 kb on - strand, within Atu5450 at 442.686 kb on - strand, within Atu5450 at 442.686 kb on - strand, within Atu5450 at 442.749 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.767 kb on + strand, within Atu5450 at 442.767 kb on + strand, within Atu5450 at 442.922 kb on + strand at 443.016 kb on + strand at 443.016 kb on + strand at 443.125 kb on + strand, within Atu5451 at 443.128 kb on - strand, within Atu5451 at 443.254 kb on - strand at 443.427 kb on + strand at 443.446 kb on - strand at 443.455 kb on - strand at 443.460 kb on - strand at 443.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 441,086 + Atu5447 0.81 -0.4 441,099 - Atu5447 0.83 +1.4 441,109 - Atu5447 0.84 +0.9 441,223 - +0.1 441,242 + -0.2 441,242 + +0.3 441,248 + -0.2 441,250 - +0.1 441,250 - -0.5 441,250 - -0.0 441,254 + +0.3 441,371 - -0.4 441,443 + +0.5 441,443 + +1.0 441,517 - +1.3 441,529 - +0.5 441,598 - Atu5448 0.34 +0.2 441,598 - Atu5448 0.34 -1.1 441,598 - Atu5448 0.34 +0.7 441,600 + Atu5448 0.35 +0.1 441,600 + Atu5448 0.35 -0.2 441,600 + Atu5448 0.35 -0.6 441,600 + Atu5448 0.35 -0.2 441,608 - Atu5448 0.38 +0.1 441,622 - Atu5448 0.44 +0.2 441,749 - +0.3 441,841 + -0.2 441,847 - +0.0 441,847 - +0.0 441,868 + +0.2 441,876 - -0.3 441,944 + +1.1 441,952 - -0.3 441,994 + -0.3 441,994 + +0.1 442,002 - -0.1 442,034 - +0.3 442,046 - +1.1 442,059 + +0.2 442,059 + -0.3 442,059 + +0.2 442,073 - +0.2 442,078 + +0.0 442,080 - -0.4 442,093 + -0.1 442,191 + Atu5449 0.26 +0.6 442,265 - Atu5449 0.41 +1.0 442,279 + Atu5449 0.44 -0.2 442,286 - Atu5449 0.45 +0.1 442,323 - Atu5449 0.53 +1.6 442,352 + Atu5449 0.59 +0.6 442,391 - Atu5449 0.68 -0.4 442,500 + -0.2 442,606 - +1.4 442,673 - Atu5450 0.22 +0.6 442,686 - Atu5450 0.26 -0.8 442,686 - Atu5450 0.26 -0.1 442,749 + Atu5450 0.47 +0.2 442,762 + Atu5450 0.51 -0.1 442,762 + Atu5450 0.51 +0.0 442,762 + Atu5450 0.51 -0.1 442,767 + Atu5450 0.53 +0.4 442,767 + Atu5450 0.53 +0.2 442,922 + +0.9 443,016 + +2.6 443,016 + +0.5 443,125 + Atu5451 0.39 -0.3 443,128 - Atu5451 0.40 -0.3 443,254 - +0.7 443,427 + +0.6 443,446 - -0.1 443,455 - +0.2 443,460 - +1.9 443,519 - +0.1
Or see this region's nucleotide sequence