Strain Fitness in Agrobacterium fabrum C58 around Atu5000

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5000 and Atu5001 overlap by 4 nucleotides Atu5000: Atu5000 - replication protein A, at 70 to 1,377 Atu5000 Atu5001: Atu5001 - replication protein B, at 1,374 to 2,405 Atu5001 Position (kb) 0 1 2Strain fitness (log2 ratio) -1 0 1at 0.034 kb on - strandat 0.064 kb on + strandat 0.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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34 - +0.2
64 + -0.6
72 - +1.1

Or see this region's nucleotide sequence