Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4778 and Atu4779 are separated by 72 nucleotides Atu4779 and Atu4780 are separated by 116 nucleotides
Atu4778: Atu4778 - non-heme chloroperoxidase, at 1,948,140 to 1,949,120
Atu4778
Atu4779: Atu4779 - hypothetical protein, at 1,949,193 to 1,949,591
Atu4779
Atu4780: Atu4780 - hypothetical protein, at 1,949,708 to 1,950,796
Atu4780
Position (kb) 1949
1950 Strain fitness (log2 ratio) -1
0
1
2 at 1948.217 kb on + strand at 1948.337 kb on - strand, within Atu4778 at 1948.377 kb on + strand, within Atu4778 at 1948.392 kb on - strand, within Atu4778 at 1948.392 kb on - strand, within Atu4778 at 1948.443 kb on - strand, within Atu4778 at 1948.468 kb on + strand, within Atu4778 at 1948.519 kb on + strand, within Atu4778 at 1948.640 kb on + strand, within Atu4778 at 1948.640 kb on + strand, within Atu4778 at 1948.648 kb on - strand, within Atu4778 at 1948.649 kb on + strand, within Atu4778 at 1948.740 kb on + strand, within Atu4778 at 1948.740 kb on + strand, within Atu4778 at 1948.748 kb on - strand, within Atu4778 at 1948.800 kb on - strand, within Atu4778 at 1948.830 kb on + strand, within Atu4778 at 1948.850 kb on + strand, within Atu4778 at 1948.886 kb on + strand, within Atu4778 at 1948.886 kb on + strand, within Atu4778 at 1948.894 kb on - strand, within Atu4778 at 1948.894 kb on - strand, within Atu4778 at 1948.895 kb on - strand, within Atu4778 at 1948.895 kb on - strand, within Atu4778 at 1948.906 kb on - strand, within Atu4778 at 1948.912 kb on + strand, within Atu4778 at 1948.913 kb on + strand, within Atu4778 at 1948.930 kb on - strand, within Atu4778 at 1949.037 kb on + strand at 1949.089 kb on + strand at 1949.097 kb on + strand at 1949.122 kb on - strand at 1949.122 kb on - strand at 1949.133 kb on + strand at 1949.191 kb on + strand at 1949.218 kb on - strand at 1949.259 kb on - strand, within Atu4779 at 1949.359 kb on - strand, within Atu4779 at 1949.390 kb on - strand, within Atu4779 at 1949.407 kb on + strand, within Atu4779 at 1949.512 kb on + strand, within Atu4779 at 1949.621 kb on + strand at 1949.623 kb on + strand at 1949.704 kb on + strand at 1949.756 kb on - strand at 1949.788 kb on - strand at 1949.798 kb on - strand at 1949.837 kb on - strand, within Atu4780 at 1949.877 kb on + strand, within Atu4780 at 1949.948 kb on + strand, within Atu4780 at 1950.089 kb on + strand, within Atu4780 at 1950.103 kb on - strand, within Atu4780 at 1950.105 kb on + strand, within Atu4780 at 1950.110 kb on + strand, within Atu4780 at 1950.170 kb on - strand, within Atu4780 at 1950.235 kb on - strand, within Atu4780 at 1950.236 kb on - strand, within Atu4780 at 1950.241 kb on - strand, within Atu4780 at 1950.250 kb on - strand, within Atu4780 at 1950.260 kb on - strand, within Atu4780 at 1950.537 kb on - strand, within Atu4780 at 1950.545 kb on - strand, within Atu4780 at 1950.577 kb on + strand, within Atu4780
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,948,217 + -0.3 1,948,337 - Atu4778 0.20 +0.0 1,948,377 + Atu4778 0.24 +0.3 1,948,392 - Atu4778 0.26 +0.3 1,948,392 - Atu4778 0.26 +0.6 1,948,443 - Atu4778 0.31 +0.1 1,948,468 + Atu4778 0.33 +1.0 1,948,519 + Atu4778 0.39 -0.3 1,948,640 + Atu4778 0.51 +0.2 1,948,640 + Atu4778 0.51 -0.0 1,948,648 - Atu4778 0.52 +0.2 1,948,649 + Atu4778 0.52 -0.6 1,948,740 + Atu4778 0.61 +0.3 1,948,740 + Atu4778 0.61 -0.4 1,948,748 - Atu4778 0.62 +2.0 1,948,800 - Atu4778 0.67 +0.1 1,948,830 + Atu4778 0.70 -0.7 1,948,850 + Atu4778 0.72 +0.2 1,948,886 + Atu4778 0.76 +0.1 1,948,886 + Atu4778 0.76 +1.3 1,948,894 - Atu4778 0.77 +0.5 1,948,894 - Atu4778 0.77 +1.2 1,948,895 - Atu4778 0.77 -0.1 1,948,895 - Atu4778 0.77 +0.7 1,948,906 - Atu4778 0.78 +1.0 1,948,912 + Atu4778 0.79 -0.1 1,948,913 + Atu4778 0.79 +0.8 1,948,930 - Atu4778 0.81 +0.1 1,949,037 + -0.2 1,949,089 + -0.1 1,949,097 + -0.1 1,949,122 - +0.7 1,949,122 - -0.4 1,949,133 + +0.1 1,949,191 + +0.1 1,949,218 - -0.3 1,949,259 - Atu4779 0.17 +0.8 1,949,359 - Atu4779 0.42 +0.4 1,949,390 - Atu4779 0.49 +1.1 1,949,407 + Atu4779 0.54 +1.0 1,949,512 + Atu4779 0.80 -0.4 1,949,621 + -0.4 1,949,623 + +0.2 1,949,704 + +0.2 1,949,756 - -0.2 1,949,788 - -0.3 1,949,798 - -0.1 1,949,837 - Atu4780 0.12 -0.1 1,949,877 + Atu4780 0.16 -0.6 1,949,948 + Atu4780 0.22 +0.1 1,950,089 + Atu4780 0.35 +0.0 1,950,103 - Atu4780 0.36 +0.9 1,950,105 + Atu4780 0.36 +0.3 1,950,110 + Atu4780 0.37 +0.2 1,950,170 - Atu4780 0.42 +0.4 1,950,235 - Atu4780 0.48 -0.3 1,950,236 - Atu4780 0.48 -0.1 1,950,241 - Atu4780 0.49 -0.3 1,950,250 - Atu4780 0.50 -0.2 1,950,260 - Atu4780 0.51 -0.3 1,950,537 - Atu4780 0.76 +0.7 1,950,545 - Atu4780 0.77 -0.1 1,950,577 + Atu4780 0.80 +2.0
Or see this region's nucleotide sequence