Strain Fitness in Agrobacterium fabrum C58 around Atu4183

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4180 and Atu4181 are separated by 314 nucleotidesAtu4181 and Atu4182 are separated by 58 nucleotidesAtu4182 and Atu4183 are separated by 406 nucleotidesAtu4183 and Atu4184 are separated by 91 nucleotides Atu4180: Atu4180 - 16S ribosomal RNA, at 1,304,314 to 1,305,793 Atu4180 Atu4181: Atu4181 - tRNA-Ile, at 1,306,108 to 1,306,184 Atu4181 Atu4182: Atu4182 - tRNA-Ala, at 1,306,243 to 1,306,318 Atu4182 Atu4183: Atu4183 - hypothetical protein, at 1,306,725 to 1,307,114 Atu4183 Atu4184: Atu4184 - 23S ribosomal RNA, at 1,307,206 to 1,309,440 Atu4184 Position (kb) 1306 1307 1308Strain fitness (log2 ratio) -1 0 1at 1305.988 kb on + strandat 1306.418 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,305,988 + +0.3
1,306,418 + -0.6

Or see this region's nucleotide sequence