Strain Fitness in Agrobacterium fabrum C58 around Atu4057

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4056 and Atu4057 are separated by 371 nucleotidesAtu4057 and Atu4058 are separated by 117 nucleotides Atu4056: Atu4056 - succinoglycan biosynthesis protein, at 1,173,156 to 1,174,304 Atu4056 Atu4057: Atu4057 - succinoglycan biosynthesis transport protein, at 1,174,676 to 1,176,154 Atu4057 Atu4058: Atu4058 - succinoglycan biosynthesis protein, at 1,176,272 to 1,177,237 Atu4058 Position (kb) 1174 1175 1176 1177Strain fitness (log2 ratio) -1 0 1at 1173.794 kb on + strand, within Atu4056at 1173.875 kb on - strand, within Atu4056at 1173.939 kb on - strand, within Atu4056at 1174.031 kb on - strand, within Atu4056at 1174.127 kb on - strand, within Atu4056at 1174.290 kb on - strandat 1174.321 kb on - strandat 1174.536 kb on + strandat 1174.593 kb on + strandat 1174.593 kb on + strandat 1174.760 kb on + strandat 1176.203 kb on + strandat 1176.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,173,794 + Atu4056 0.56 +0.1
1,173,875 - Atu4056 0.63 -0.0
1,173,939 - Atu4056 0.68 -0.2
1,174,031 - Atu4056 0.76 -0.1
1,174,127 - Atu4056 0.85 +0.3
1,174,290 - +0.8
1,174,321 - -0.3
1,174,536 + -0.1
1,174,593 + +0.1
1,174,593 + -1.1
1,174,760 + -0.3
1,176,203 + -0.0
1,176,262 + -0.1

Or see this region's nucleotide sequence