Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3941 and Atu3942 are separated by 259 nucleotides Atu3942 and Atu3943 are separated by 114 nucleotides Atu3943 and Atu3944 are separated by 238 nucleotides Atu3944 and Atu3947 are separated by 875 nucleotides
Atu3941: Atu3941 - 23S ribosomal RNA, at 1,044,791 to 1,047,047
Atu3941
Atu3942: Atu3942 - hypothetical protein, at 1,047,307 to 1,047,564
Atu3942
Atu3943: Atu3943 - 5S ribosomal RNA, at 1,047,679 to 1,047,797
Atu3943
Atu3944: Atu3944 - tRNA-Met, at 1,048,036 to 1,048,112
Atu3944
Atu3947: Atu3947 - oxidoreductase, at 1,048,988 to 1,050,298
Atu3947
Position (kb)
1048
1049 Strain fitness (log2 ratio)
-1
0
1 at 1048.391 kb on + strand at 1048.443 kb on + strand at 1048.570 kb on - strand at 1048.625 kb on + strand at 1048.652 kb on - strand at 1048.679 kb on + strand at 1048.738 kb on - strand at 1048.792 kb on + strand at 1048.802 kb on + strand at 1048.831 kb on + strand at 1048.831 kb on + strand at 1048.850 kb on + strand at 1048.902 kb on + strand at 1048.909 kb on + strand at 1048.917 kb on - strand at 1049.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,048,391 + -0.5 1,048,443 + +0.3 1,048,570 - -0.4 1,048,625 + +0.5 1,048,652 - +1.5 1,048,679 + -0.1 1,048,738 - +0.4 1,048,792 + -0.2 1,048,802 + +0.1 1,048,831 + -0.3 1,048,831 + -0.5 1,048,850 + -0.1 1,048,902 + -0.4 1,048,909 + -0.5 1,048,917 - -0.1 1,049,050 - +1.5
Or see this region's nucleotide sequence