Strain Fitness in Agrobacterium fabrum C58 around Atu3944

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3941 and Atu3942 are separated by 259 nucleotidesAtu3942 and Atu3943 are separated by 114 nucleotidesAtu3943 and Atu3944 are separated by 238 nucleotidesAtu3944 and Atu3947 are separated by 875 nucleotides Atu3941: Atu3941 - 23S ribosomal RNA, at 1,044,791 to 1,047,047 Atu3941 Atu3942: Atu3942 - hypothetical protein, at 1,047,307 to 1,047,564 Atu3942 Atu3943: Atu3943 - 5S ribosomal RNA, at 1,047,679 to 1,047,797 Atu3943 Atu3944: Atu3944 - tRNA-Met, at 1,048,036 to 1,048,112 Atu3944 Atu3947: Atu3947 - oxidoreductase, at 1,048,988 to 1,050,298 Atu3947 Position (kb) 1048 1049Strain fitness (log2 ratio) -1 0 1at 1048.391 kb on + strandat 1048.443 kb on + strandat 1048.570 kb on - strandat 1048.625 kb on + strandat 1048.652 kb on - strandat 1048.679 kb on + strandat 1048.738 kb on - strandat 1048.792 kb on + strandat 1048.802 kb on + strandat 1048.831 kb on + strandat 1048.831 kb on + strandat 1048.850 kb on + strandat 1048.902 kb on + strandat 1048.909 kb on + strandat 1048.917 kb on - strandat 1049.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,048,391 + -0.5
1,048,443 + +0.3
1,048,570 - -0.4
1,048,625 + +0.5
1,048,652 - +1.5
1,048,679 + -0.1
1,048,738 - +0.4
1,048,792 + -0.2
1,048,802 + +0.1
1,048,831 + -0.3
1,048,831 + -0.5
1,048,850 + -0.1
1,048,902 + -0.4
1,048,909 + -0.5
1,048,917 - -0.1
1,049,050 - +1.5

Or see this region's nucleotide sequence