Strain Fitness in Agrobacterium fabrum C58 around Atu3942

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3941 and Atu3942 are separated by 259 nucleotidesAtu3942 and Atu3943 are separated by 114 nucleotidesAtu3943 and Atu3944 are separated by 238 nucleotides Atu3941: Atu3941 - 23S ribosomal RNA, at 1,044,791 to 1,047,047 Atu3941 Atu3942: Atu3942 - hypothetical protein, at 1,047,307 to 1,047,564 Atu3942 Atu3943: Atu3943 - 5S ribosomal RNA, at 1,047,679 to 1,047,797 Atu3943 Atu3944: Atu3944 - tRNA-Met, at 1,048,036 to 1,048,112 Atu3944 Position (kb) 1047 1048Strain fitness (log2 ratio) -1 0 1at 1048.391 kb on + strandat 1048.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,048,391 + -0.5
1,048,443 + +0.3

Or see this region's nucleotide sequence