Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3662 and Atu3663 are separated by 226 nucleotides Atu3663 and Atu3664 are separated by 174 nucleotides Atu3664 and Atu3665 are separated by 272 nucleotides
Atu3662: Atu3662 - hypothetical protein, at 710,360 to 711,970
Atu3662
Atu3663: Atu3663 - hypothetical protein, at 712,197 to 712,619
Atu3663
Atu3664: Atu3664 - epoxide hydrolase, at 712,794 to 713,765
Atu3664
Atu3665: Atu3665 - short-chain dehydrogenase, at 714,038 to 714,784
Atu3665
Position (kb) 712
713
714 Strain fitness (log2 ratio) -1
0
1
2 at 711.795 kb on - strand, within Atu3662 at 711.795 kb on - strand, within Atu3662 at 711.813 kb on - strand at 711.883 kb on + strand at 711.909 kb on - strand at 711.920 kb on - strand at 711.960 kb on - strand at 712.046 kb on + strand at 712.115 kb on + strand at 712.169 kb on + strand at 712.180 kb on + strand at 712.237 kb on - strand at 712.548 kb on - strand, within Atu3663 at 712.560 kb on - strand, within Atu3663 at 712.580 kb on - strand at 713.838 kb on + strand at 713.883 kb on + strand at 713.900 kb on + strand at 713.910 kb on - strand at 713.919 kb on + strand at 713.919 kb on + strand at 713.964 kb on + strand at 713.998 kb on + strand at 714.006 kb on + strand at 714.064 kb on - strand at 714.080 kb on - strand at 714.260 kb on + strand, within Atu3665 at 714.329 kb on + strand, within Atu3665 at 714.465 kb on - strand, within Atu3665 at 714.476 kb on + strand, within Atu3665 at 714.481 kb on + strand, within Atu3665 at 714.484 kb on - strand, within Atu3665 at 714.505 kb on + strand, within Atu3665 at 714.550 kb on + strand, within Atu3665 at 714.558 kb on - strand, within Atu3665 at 714.608 kb on + strand, within Atu3665 at 714.608 kb on + strand, within Atu3665 at 714.608 kb on + strand, within Atu3665 at 714.616 kb on - strand, within Atu3665 at 714.630 kb on + strand, within Atu3665 at 714.641 kb on + strand, within Atu3665 at 714.672 kb on + strand, within Atu3665 at 714.674 kb on + strand, within Atu3665 at 714.680 kb on - strand, within Atu3665
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 711,795 - Atu3662 0.89 -0.4 711,795 - Atu3662 0.89 +0.3 711,813 - +0.4 711,883 + +1.6 711,909 - -1.0 711,920 - -0.3 711,960 - +0.1 712,046 + -0.2 712,115 + -0.1 712,169 + +0.5 712,180 + +1.4 712,237 - -0.1 712,548 - Atu3663 0.83 +0.0 712,560 - Atu3663 0.86 -0.4 712,580 - +0.4 713,838 + +2.0 713,883 + -0.1 713,900 + -0.1 713,910 - +0.9 713,919 + -0.0 713,919 + +0.1 713,964 + +0.3 713,998 + +0.7 714,006 + +0.2 714,064 - +0.7 714,080 - -0.7 714,260 + Atu3665 0.30 -0.1 714,329 + Atu3665 0.39 -0.0 714,465 - Atu3665 0.57 +1.0 714,476 + Atu3665 0.59 +0.1 714,481 + Atu3665 0.59 -0.2 714,484 - Atu3665 0.60 -0.2 714,505 + Atu3665 0.63 +0.3 714,550 + Atu3665 0.69 +1.4 714,558 - Atu3665 0.70 -0.4 714,608 + Atu3665 0.76 -0.4 714,608 + Atu3665 0.76 -0.3 714,608 + Atu3665 0.76 -0.3 714,616 - Atu3665 0.77 +0.3 714,630 + Atu3665 0.79 +0.1 714,641 + Atu3665 0.81 +0.1 714,672 + Atu3665 0.85 -0.2 714,674 + Atu3665 0.85 -0.0 714,680 - Atu3665 0.86 -0.5
Or see this region's nucleotide sequence