Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3642 and Atu3643 are separated by 129 nucleotides Atu3643 and Atu3644 are separated by 227 nucleotides Atu3644 and Atu3645 are separated by 118 nucleotides
Atu3642: Atu3642 - vgrG protein, at 694,941 to 697,205
Atu3642
Atu3643: Atu3643 - hypothetical protein, at 697,335 to 698,270
Atu3643
Atu3644: Atu3644 - hypothetical protein, at 698,498 to 698,953
Atu3644
Atu3645: Atu3645 - hypothetical protein, at 699,072 to 699,479
Atu3645
Position (kb) 697
698
699 Strain fitness (log2 ratio) -1
0
1
2 at 696.363 kb on - strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.976 kb on + strand, within Atu3642 at 696.986 kb on + strand at 697.028 kb on + strand at 697.075 kb on - strand at 697.274 kb on - strand at 697.318 kb on - strand at 697.386 kb on - strand at 697.413 kb on + strand at 697.482 kb on + strand, within Atu3643 at 697.490 kb on - strand, within Atu3643 at 697.502 kb on + strand, within Atu3643 at 697.547 kb on + strand, within Atu3643 at 697.619 kb on + strand, within Atu3643 at 697.654 kb on + strand, within Atu3643 at 697.718 kb on - strand, within Atu3643 at 697.745 kb on + strand, within Atu3643 at 697.757 kb on + strand, within Atu3643 at 697.789 kb on - strand, within Atu3643 at 697.806 kb on - strand, within Atu3643 at 697.878 kb on - strand, within Atu3643 at 697.878 kb on - strand, within Atu3643 at 697.922 kb on + strand, within Atu3643 at 697.934 kb on + strand, within Atu3643 at 697.984 kb on + strand, within Atu3643 at 697.999 kb on - strand, within Atu3643 at 698.026 kb on - strand, within Atu3643 at 698.047 kb on - strand, within Atu3643 at 698.066 kb on - strand, within Atu3643 at 698.090 kb on - strand, within Atu3643 at 698.110 kb on + strand, within Atu3643 at 698.112 kb on + strand, within Atu3643 at 698.112 kb on + strand, within Atu3643 at 698.120 kb on - strand, within Atu3643 at 698.130 kb on - strand, within Atu3643 at 698.130 kb on - strand, within Atu3643 at 698.159 kb on - strand, within Atu3643 at 698.220 kb on - strand at 698.220 kb on - strand at 698.238 kb on - strand at 698.238 kb on - strand at 698.238 kb on - strand at 698.264 kb on + strand at 698.264 kb on + strand at 698.264 kb on + strand at 698.264 kb on + strand at 698.272 kb on - strand at 698.272 kb on - strand at 698.272 kb on - strand at 698.274 kb on + strand at 698.358 kb on + strand at 698.385 kb on - strand at 698.521 kb on + strand at 698.797 kb on + strand, within Atu3644 at 698.864 kb on - strand, within Atu3644 at 698.868 kb on + strand, within Atu3644 at 698.868 kb on + strand, within Atu3644 at 698.876 kb on - strand, within Atu3644 at 698.876 kb on - strand, within Atu3644 at 698.876 kb on - strand, within Atu3644 at 698.969 kb on + strand at 699.037 kb on + strand at 699.038 kb on + strand at 699.045 kb on - strand at 699.069 kb on - strand at 699.076 kb on - strand at 699.147 kb on + strand, within Atu3645 at 699.147 kb on + strand, within Atu3645 at 699.178 kb on + strand, within Atu3645 at 699.198 kb on + strand, within Atu3645 at 699.198 kb on - strand, within Atu3645 at 699.230 kb on + strand, within Atu3645 at 699.254 kb on - strand, within Atu3645 at 699.256 kb on + strand, within Atu3645
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 696,363 - Atu3642 0.63 +0.5 696,721 + Atu3642 0.79 +0.2 696,721 + Atu3642 0.79 +0.0 696,721 + Atu3642 0.79 -0.8 696,721 + Atu3642 0.79 +0.4 696,721 + Atu3642 0.79 +0.7 696,721 + Atu3642 0.79 -0.7 696,976 + Atu3642 0.90 +1.8 696,986 + +0.2 697,028 + +0.2 697,075 - +0.1 697,274 - +1.1 697,318 - +1.1 697,386 - +0.6 697,413 + +0.0 697,482 + Atu3643 0.16 +0.2 697,490 - Atu3643 0.17 -0.0 697,502 + Atu3643 0.18 -0.5 697,547 + Atu3643 0.23 +0.6 697,619 + Atu3643 0.30 +0.1 697,654 + Atu3643 0.34 -1.1 697,718 - Atu3643 0.41 +0.4 697,745 + Atu3643 0.44 +0.3 697,757 + Atu3643 0.45 +0.8 697,789 - Atu3643 0.49 +0.6 697,806 - Atu3643 0.50 +0.1 697,878 - Atu3643 0.58 +0.1 697,878 - Atu3643 0.58 +0.7 697,922 + Atu3643 0.63 +0.2 697,934 + Atu3643 0.64 -0.3 697,984 + Atu3643 0.69 +0.6 697,999 - Atu3643 0.71 +0.7 698,026 - Atu3643 0.74 +1.1 698,047 - Atu3643 0.76 +0.5 698,066 - Atu3643 0.78 +1.8 698,090 - Atu3643 0.81 +1.4 698,110 + Atu3643 0.83 +0.2 698,112 + Atu3643 0.83 +0.5 698,112 + Atu3643 0.83 +0.7 698,120 - Atu3643 0.84 -0.9 698,130 - Atu3643 0.85 +0.0 698,130 - Atu3643 0.85 +0.2 698,159 - Atu3643 0.88 +0.1 698,220 - +0.6 698,220 - +1.4 698,238 - +0.8 698,238 - -0.2 698,238 - +0.0 698,264 + +0.3 698,264 + +0.0 698,264 + -0.0 698,264 + +0.0 698,272 - -0.6 698,272 - -0.0 698,272 - -0.5 698,274 + +1.0 698,358 + +0.2 698,385 - -0.4 698,521 + +2.0 698,797 + Atu3644 0.66 +0.0 698,864 - Atu3644 0.80 +0.4 698,868 + Atu3644 0.81 -1.1 698,868 + Atu3644 0.81 -0.7 698,876 - Atu3644 0.83 +1.0 698,876 - Atu3644 0.83 +0.6 698,876 - Atu3644 0.83 -0.1 698,969 + +0.5 699,037 + +0.9 699,038 + -0.6 699,045 - +0.4 699,069 - -1.1 699,076 - +0.3 699,147 + Atu3645 0.18 -0.3 699,147 + Atu3645 0.18 -0.6 699,178 + Atu3645 0.26 -0.1 699,198 + Atu3645 0.31 +0.2 699,198 - Atu3645 0.31 +0.4 699,230 + Atu3645 0.39 +0.3 699,254 - Atu3645 0.45 +0.1 699,256 + Atu3645 0.45 -0.8
Or see this region's nucleotide sequence