Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8111.2 and Atu3636 are separated by 324 nucleotides Atu3636 and Atu3637 are separated by 157 nucleotides Atu3637 and Atu3638 are separated by 258 nucleotides
Atu8111.2: Atu8111.2 - tRNA-Arg, at 688,922 to 688,961
Atu8111.2
Atu3636: Atu3636 - hypothetical protein, at 689,286 to 689,732
Atu3636
Atu3637: Atu3637 - 30S ribosomal protein S21, at 689,890 to 690,120
Atu3637
Atu3638: Atu3638 - hypothetical protein, at 690,379 to 691,503
Atu3638
Position (kb) 689
690
691 Strain fitness (log2 ratio) -1
0
1 at 689.010 kb on + strand at 689.066 kb on - strand at 689.125 kb on + strand at 689.233 kb on - strand at 689.291 kb on - strand at 689.388 kb on + strand, within Atu3636 at 689.448 kb on + strand, within Atu3636 at 689.458 kb on + strand, within Atu3636 at 689.561 kb on + strand, within Atu3636 at 689.564 kb on - strand, within Atu3636 at 689.564 kb on - strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.574 kb on - strand, within Atu3636 at 689.574 kb on - strand, within Atu3636 at 689.596 kb on - strand, within Atu3636 at 689.606 kb on - strand, within Atu3636 at 689.606 kb on - strand, within Atu3636 at 689.683 kb on - strand, within Atu3636 at 689.880 kb on - strand at 689.998 kb on + strand, within Atu3637 at 690.176 kb on + strand at 690.192 kb on - strand at 690.417 kb on - strand at 690.434 kb on - strand at 690.459 kb on + strand at 690.467 kb on - strand at 690.492 kb on - strand, within Atu3638 at 690.543 kb on + strand, within Atu3638 at 690.560 kb on + strand, within Atu3638 at 690.568 kb on - strand, within Atu3638 at 690.639 kb on + strand, within Atu3638 at 690.647 kb on - strand, within Atu3638 at 690.759 kb on + strand, within Atu3638 at 690.767 kb on - strand, within Atu3638 at 690.825 kb on - strand, within Atu3638 at 690.864 kb on + strand, within Atu3638 at 691.057 kb on + strand, within Atu3638 at 691.065 kb on - strand, within Atu3638 at 691.068 kb on + strand, within Atu3638 at 691.075 kb on - strand, within Atu3638 at 691.075 kb on - strand, within Atu3638 at 691.075 kb on - strand, within Atu3638 at 691.096 kb on + strand, within Atu3638 at 691.112 kb on + strand, within Atu3638
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 689,010 + -1.0 689,066 - -0.4 689,125 + -0.1 689,233 - -0.9 689,291 - -0.0 689,388 + Atu3636 0.23 +0.1 689,448 + Atu3636 0.36 -0.2 689,458 + Atu3636 0.38 +0.1 689,561 + Atu3636 0.62 +0.1 689,564 - Atu3636 0.62 +0.2 689,564 - Atu3636 0.62 -0.6 689,566 + Atu3636 0.63 +0.2 689,566 + Atu3636 0.63 +0.8 689,566 + Atu3636 0.63 +0.1 689,566 + Atu3636 0.63 +0.1 689,566 + Atu3636 0.63 -0.1 689,566 + Atu3636 0.63 -1.2 689,574 - Atu3636 0.64 +0.1 689,574 - Atu3636 0.64 +0.6 689,596 - Atu3636 0.69 -0.1 689,606 - Atu3636 0.72 -0.2 689,606 - Atu3636 0.72 +0.5 689,683 - Atu3636 0.89 +0.1 689,880 - +0.1 689,998 + Atu3637 0.47 -1.3 690,176 + +1.1 690,192 - -1.1 690,417 - +0.2 690,434 - +1.4 690,459 + +0.2 690,467 - +0.8 690,492 - Atu3638 0.10 +0.3 690,543 + Atu3638 0.15 +0.2 690,560 + Atu3638 0.16 -0.0 690,568 - Atu3638 0.17 +0.3 690,639 + Atu3638 0.23 +0.3 690,647 - Atu3638 0.24 -0.8 690,759 + Atu3638 0.34 +0.1 690,767 - Atu3638 0.34 +0.5 690,825 - Atu3638 0.40 +0.9 690,864 + Atu3638 0.43 +1.4 691,057 + Atu3638 0.60 +0.4 691,065 - Atu3638 0.61 +0.5 691,068 + Atu3638 0.61 +1.0 691,075 - Atu3638 0.62 +0.8 691,075 - Atu3638 0.62 +0.1 691,075 - Atu3638 0.62 +0.3 691,096 + Atu3638 0.64 -0.1 691,112 + Atu3638 0.65 -1.2
Or see this region's nucleotide sequence