Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3616 and Atu3617 are separated by 252 nucleotides Atu3617 and Atu3618 are separated by 165 nucleotides Atu3618 and Atu3619 are separated by 111 nucleotides
Atu3616: Atu3616 - hypothetical protein, at 670,945 to 671,718
Atu3616
Atu3617: Atu3617 - 50S ribosomal protein L28, at 671,971 to 672,261
Atu3617
Atu3618: Atu3618 - hypothetical protein, at 672,427 to 673,065
Atu3618
Atu3619: Atu3619 - hypothetical protein, at 673,177 to 673,512
Atu3619
Position (kb) 671
672
673 Strain fitness (log2 ratio) -1
0
1 at 670.978 kb on - strand at 670.979 kb on + strand at 671.292 kb on - strand, within Atu3616 at 671.338 kb on + strand, within Atu3616 at 671.341 kb on - strand, within Atu3616 at 671.346 kb on - strand, within Atu3616 at 671.346 kb on - strand, within Atu3616 at 671.394 kb on + strand, within Atu3616 at 671.479 kb on - strand, within Atu3616 at 671.536 kb on - strand, within Atu3616 at 671.622 kb on + strand, within Atu3616 at 671.629 kb on + strand, within Atu3616 at 671.737 kb on - strand at 672.313 kb on + strand at 672.547 kb on + strand, within Atu3618 at 672.547 kb on + strand, within Atu3618 at 672.555 kb on - strand, within Atu3618 at 672.562 kb on + strand, within Atu3618 at 672.724 kb on - strand, within Atu3618 at 672.761 kb on - strand, within Atu3618 at 672.761 kb on - strand, within Atu3618 at 672.822 kb on + strand, within Atu3618 at 672.834 kb on + strand, within Atu3618 at 672.842 kb on + strand, within Atu3618 at 672.866 kb on + strand, within Atu3618 at 672.960 kb on + strand, within Atu3618 at 672.979 kb on - strand, within Atu3618 at 672.981 kb on - strand, within Atu3618 at 673.013 kb on - strand at 673.028 kb on + strand at 673.036 kb on - strand at 673.097 kb on + strand at 673.159 kb on + strand at 673.159 kb on - strand at 673.255 kb on - strand, within Atu3619
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 670,978 - +0.3 670,979 + -0.3 671,292 - Atu3616 0.45 -0.3 671,338 + Atu3616 0.51 -0.4 671,341 - Atu3616 0.51 +0.5 671,346 - Atu3616 0.52 -0.4 671,346 - Atu3616 0.52 +0.7 671,394 + Atu3616 0.58 +0.2 671,479 - Atu3616 0.69 -0.1 671,536 - Atu3616 0.76 +0.0 671,622 + Atu3616 0.87 +0.8 671,629 + Atu3616 0.88 +0.4 671,737 - +0.3 672,313 + +1.4 672,547 + Atu3618 0.19 +0.1 672,547 + Atu3618 0.19 +0.0 672,555 - Atu3618 0.20 +0.1 672,562 + Atu3618 0.21 -0.2 672,724 - Atu3618 0.46 +0.1 672,761 - Atu3618 0.52 +0.5 672,761 - Atu3618 0.52 +0.0 672,822 + Atu3618 0.62 -0.2 672,834 + Atu3618 0.64 +0.6 672,842 + Atu3618 0.65 +0.7 672,866 + Atu3618 0.69 +0.1 672,960 + Atu3618 0.83 +0.5 672,979 - Atu3618 0.86 -0.2 672,981 - Atu3618 0.87 +0.0 673,013 - +0.1 673,028 + -0.8 673,036 - -0.3 673,097 + +0.1 673,159 + +0.7 673,159 - +0.1 673,255 - Atu3619 0.23 -0.7
Or see this region's nucleotide sequence