Strain Fitness in Agrobacterium fabrum C58 around Atu3326

Experiment: D,L-Malic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3325 and Atu3326 are separated by 7 nucleotidesAtu3326 and Atu3327 are separated by 193 nucleotides Atu3325: Atu3325 - exopolysaccharide production protein, at 358,370 to 359,638 Atu3325 Atu3326: Atu3326 - exopolysaccharide production protein, at 359,646 to 360,902 Atu3326 Atu3327: Atu3327 - succinoglycan exopolysaccharide synthesis protein, at 361,096 to 361,776 Atu3327 Position (kb) 359 360 361Strain fitness (log2 ratio) -1 0 1at 361.179 kb on - strand, within Atu3327at 361.357 kb on - strand, within Atu3327at 361.414 kb on - strand, within Atu3327at 361.664 kb on - strand, within Atu3327at 361.811 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
remove
361,179 - Atu3327 0.12 +0.0
361,357 - Atu3327 0.38 +0.1
361,414 - Atu3327 0.47 +0.2
361,664 - Atu3327 0.83 -0.4
361,811 + -0.4

Or see this region's nucleotide sequence