Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3285 and Atu3286 are separated by 449 nucleotides Atu3286 and Atu3287 are separated by 50 nucleotides Atu3287 and Atu3288 overlap by 4 nucleotides
Atu3285: Atu3285 - alpha-glucosidase, at 310,558 to 312,552
Atu3285
Atu3286: Atu3286 - ABC transporter permease, at 313,002 to 313,787
Atu3286
Atu3287: Atu3287 - thiamine biosynthesis associated protein, at 313,838 to 314,734
Atu3287
Atu3288: Atu3288 - hydroxyethylthiazole kinase, at 314,731 to 315,471
Atu3288
Position (kb) 313
314 Strain fitness (log2 ratio) -2
-1
0
1 at 312.024 kb on - strand, within Atu3285 at 312.039 kb on + strand, within Atu3285 at 312.066 kb on - strand, within Atu3285 at 312.113 kb on + strand, within Atu3285 at 312.121 kb on - strand, within Atu3285 at 312.121 kb on - strand, within Atu3285 at 312.121 kb on - strand, within Atu3285 at 312.156 kb on + strand, within Atu3285 at 312.212 kb on + strand, within Atu3285 at 312.220 kb on - strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.311 kb on - strand, within Atu3285 at 312.311 kb on - strand, within Atu3285 at 312.313 kb on + strand, within Atu3285 at 312.321 kb on - strand, within Atu3285 at 312.321 kb on - strand, within Atu3285 at 312.326 kb on - strand, within Atu3285 at 312.343 kb on - strand, within Atu3285 at 312.415 kb on + strand at 312.418 kb on + strand at 312.418 kb on + strand at 312.492 kb on + strand at 312.515 kb on - strand at 312.548 kb on + strand at 312.548 kb on + strand at 312.570 kb on - strand at 312.638 kb on - strand at 312.651 kb on + strand at 312.715 kb on - strand at 312.730 kb on - strand at 312.790 kb on + strand at 312.835 kb on + strand at 312.835 kb on + strand at 312.906 kb on + strand at 312.906 kb on + strand at 312.914 kb on - strand at 312.928 kb on + strand at 312.957 kb on + strand at 312.996 kb on + strand at 313.012 kb on + strand at 313.035 kb on - strand at 313.060 kb on + strand at 313.154 kb on + strand, within Atu3286 at 313.255 kb on + strand, within Atu3286 at 313.327 kb on + strand, within Atu3286 at 313.397 kb on - strand, within Atu3286 at 313.415 kb on - strand, within Atu3286 at 313.487 kb on - strand, within Atu3286 at 313.521 kb on + strand, within Atu3286 at 313.621 kb on - strand, within Atu3286 at 313.629 kb on - strand, within Atu3286 at 313.677 kb on + strand, within Atu3286 at 313.682 kb on + strand, within Atu3286 at 313.693 kb on + strand, within Atu3286 at 313.735 kb on + strand at 313.796 kb on + strand at 313.979 kb on - strand, within Atu3287 at 314.035 kb on - strand, within Atu3287 at 314.044 kb on + strand, within Atu3287 at 314.103 kb on - strand, within Atu3287 at 314.232 kb on - strand, within Atu3287 at 314.245 kb on + strand, within Atu3287 at 314.342 kb on - strand, within Atu3287 at 314.481 kb on + strand, within Atu3287 at 314.489 kb on - strand, within Atu3287 at 314.565 kb on - strand, within Atu3287 at 314.568 kb on - strand, within Atu3287 at 314.622 kb on - strand, within Atu3287 at 314.678 kb on - strand at 314.678 kb on - strand at 314.770 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 312,024 - Atu3285 0.73 +0.1 312,039 + Atu3285 0.74 +0.2 312,066 - Atu3285 0.76 -0.1 312,113 + Atu3285 0.78 +0.9 312,121 - Atu3285 0.78 -0.3 312,121 - Atu3285 0.78 +1.0 312,121 - Atu3285 0.78 -0.1 312,156 + Atu3285 0.80 +0.1 312,212 + Atu3285 0.83 -0.3 312,220 - Atu3285 0.83 +0.3 312,303 + Atu3285 0.87 +0.6 312,303 + Atu3285 0.87 +1.6 312,303 + Atu3285 0.87 -0.1 312,303 + Atu3285 0.87 +0.0 312,303 + Atu3285 0.87 -1.1 312,311 - Atu3285 0.88 -0.0 312,311 - Atu3285 0.88 +0.3 312,313 + Atu3285 0.88 -0.5 312,321 - Atu3285 0.88 +0.1 312,321 - Atu3285 0.88 -0.1 312,326 - Atu3285 0.89 +0.4 312,343 - Atu3285 0.89 -0.3 312,415 + +0.2 312,418 + -0.9 312,418 + +0.2 312,492 + +0.3 312,515 - +0.4 312,548 + +0.4 312,548 + +1.1 312,570 - +0.5 312,638 - +0.1 312,651 + +0.4 312,715 - +0.7 312,730 - -0.2 312,790 + +0.1 312,835 + -0.1 312,835 + -0.8 312,906 + -0.7 312,906 + -1.4 312,914 - +0.4 312,928 + +0.2 312,957 + -1.0 312,996 + +0.8 313,012 + +0.7 313,035 - +1.1 313,060 + +0.1 313,154 + Atu3286 0.19 +1.2 313,255 + Atu3286 0.32 +0.3 313,327 + Atu3286 0.41 +0.3 313,397 - Atu3286 0.50 -0.7 313,415 - Atu3286 0.53 +0.9 313,487 - Atu3286 0.62 +0.2 313,521 + Atu3286 0.66 +0.9 313,621 - Atu3286 0.79 -0.5 313,629 - Atu3286 0.80 +0.0 313,677 + Atu3286 0.86 +0.5 313,682 + Atu3286 0.87 +0.4 313,693 + Atu3286 0.88 +0.6 313,735 + -0.2 313,796 + -0.3 313,979 - Atu3287 0.16 -1.8 314,035 - Atu3287 0.22 -0.2 314,044 + Atu3287 0.23 +0.0 314,103 - Atu3287 0.30 -0.5 314,232 - Atu3287 0.44 +0.2 314,245 + Atu3287 0.45 +1.1 314,342 - Atu3287 0.56 -0.9 314,481 + Atu3287 0.72 +1.2 314,489 - Atu3287 0.73 -1.3 314,565 - Atu3287 0.81 +0.7 314,568 - Atu3287 0.81 +0.1 314,622 - Atu3287 0.87 -0.2 314,678 - -0.2 314,678 - -1.0 314,770 + -1.2
Or see this region's nucleotide sequence