Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3085 and Atu3086 are separated by 11 nucleotides Atu3086 and Atu3087 are separated by 3 nucleotides Atu3087 and Atu3088 are separated by 237 nucleotides
Atu3085: Atu3085 - hydantoin racemase, at 90,839 to 91,582
Atu3085
Atu3086: Atu3086 - spermidine/putrescine ABC transporter permease, at 91,594 to 92,412
Atu3086
Atu3087: Atu3087 - spermidine/putrescine ABC transporter permease, at 92,416 to 93,327
Atu3087
Atu3088: Atu3088 - spermidine/putrescine ABC transporter substrate-binding protein, at 93,565 to 94,854
Atu3088
Position (kb) 92
93
94 Strain fitness (log2 ratio) -1
0
1
2 at 91.554 kb on + strand at 91.623 kb on - strand at 91.640 kb on - strand at 91.758 kb on - strand, within Atu3086 at 91.785 kb on + strand, within Atu3086 at 91.785 kb on - strand, within Atu3086 at 91.797 kb on + strand, within Atu3086 at 91.830 kb on - strand, within Atu3086 at 91.865 kb on - strand, within Atu3086 at 91.922 kb on + strand, within Atu3086 at 92.015 kb on - strand, within Atu3086 at 92.130 kb on - strand, within Atu3086 at 92.252 kb on - strand, within Atu3086 at 92.262 kb on - strand, within Atu3086 at 92.332 kb on - strand at 92.355 kb on - strand at 92.414 kb on + strand at 92.414 kb on + strand at 92.422 kb on - strand at 92.422 kb on - strand at 92.431 kb on + strand at 92.439 kb on - strand at 92.469 kb on - strand at 92.479 kb on + strand at 92.484 kb on + strand at 92.484 kb on + strand at 92.581 kb on - strand, within Atu3087 at 92.598 kb on - strand, within Atu3087 at 92.676 kb on + strand, within Atu3087 at 92.762 kb on + strand, within Atu3087 at 92.762 kb on + strand, within Atu3087 at 92.770 kb on - strand, within Atu3087 at 92.774 kb on + strand, within Atu3087 at 92.791 kb on + strand, within Atu3087 at 92.799 kb on - strand, within Atu3087 at 92.813 kb on + strand, within Atu3087 at 92.867 kb on + strand, within Atu3087 at 92.875 kb on - strand, within Atu3087 at 92.953 kb on - strand, within Atu3087 at 92.964 kb on - strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.028 kb on - strand, within Atu3087 at 93.083 kb on - strand, within Atu3087 at 93.090 kb on + strand, within Atu3087 at 93.090 kb on + strand, within Atu3087 at 93.115 kb on + strand, within Atu3087 at 93.139 kb on + strand, within Atu3087 at 93.244 kb on + strand at 93.272 kb on - strand at 93.312 kb on + strand at 93.312 kb on + strand at 93.332 kb on - strand at 93.376 kb on + strand at 93.444 kb on - strand at 93.484 kb on - strand at 93.500 kb on + strand at 93.508 kb on - strand at 93.516 kb on - strand at 93.599 kb on + strand at 93.662 kb on - strand at 93.737 kb on - strand, within Atu3088 at 93.742 kb on - strand, within Atu3088 at 93.757 kb on - strand, within Atu3088 at 93.790 kb on + strand, within Atu3088 at 93.848 kb on - strand, within Atu3088 at 93.875 kb on + strand, within Atu3088 at 93.898 kb on - strand, within Atu3088 at 93.909 kb on + strand, within Atu3088 at 93.910 kb on + strand, within Atu3088 at 93.917 kb on - strand, within Atu3088 at 93.918 kb on - strand, within Atu3088 at 93.931 kb on + strand, within Atu3088 at 94.071 kb on - strand, within Atu3088 at 94.081 kb on - strand, within Atu3088 at 94.097 kb on + strand, within Atu3088 at 94.296 kb on + strand, within Atu3088
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 91,554 + -0.7 91,623 - +0.4 91,640 - +0.3 91,758 - Atu3086 0.20 +0.1 91,785 + Atu3086 0.23 -0.0 91,785 - Atu3086 0.23 -0.3 91,797 + Atu3086 0.25 +0.2 91,830 - Atu3086 0.29 +0.4 91,865 - Atu3086 0.33 +0.2 91,922 + Atu3086 0.40 -0.6 92,015 - Atu3086 0.51 +0.2 92,130 - Atu3086 0.65 +0.9 92,252 - Atu3086 0.80 -0.0 92,262 - Atu3086 0.82 +0.1 92,332 - +0.4 92,355 - -0.5 92,414 + -0.1 92,414 + +0.1 92,422 - +0.3 92,422 - -0.3 92,431 + -0.1 92,439 - -0.4 92,469 - +0.2 92,479 + +0.2 92,484 + +0.6 92,484 + -0.1 92,581 - Atu3087 0.18 +0.9 92,598 - Atu3087 0.20 +0.0 92,676 + Atu3087 0.29 +0.0 92,762 + Atu3087 0.38 +0.6 92,762 + Atu3087 0.38 +0.6 92,770 - Atu3087 0.39 +0.6 92,774 + Atu3087 0.39 +0.4 92,791 + Atu3087 0.41 -0.2 92,799 - Atu3087 0.42 +1.9 92,813 + Atu3087 0.44 +0.3 92,867 + Atu3087 0.49 -0.8 92,875 - Atu3087 0.50 +0.0 92,953 - Atu3087 0.59 +0.4 92,964 - Atu3087 0.60 +0.1 93,020 + Atu3087 0.66 +2.2 93,020 + Atu3087 0.66 +1.0 93,020 + Atu3087 0.66 +0.2 93,020 + Atu3087 0.66 -1.7 93,020 + Atu3087 0.66 +0.3 93,020 + Atu3087 0.66 +0.2 93,020 + Atu3087 0.66 +0.9 93,028 - Atu3087 0.67 -0.5 93,083 - Atu3087 0.73 +0.5 93,090 + Atu3087 0.74 -0.3 93,090 + Atu3087 0.74 +0.4 93,115 + Atu3087 0.77 +0.2 93,139 + Atu3087 0.79 +0.5 93,244 + +0.9 93,272 - +0.0 93,312 + +0.1 93,312 + -0.1 93,332 - +1.4 93,376 + +0.7 93,444 - +0.6 93,484 - +1.1 93,500 + -0.7 93,508 - -0.2 93,516 - -1.6 93,599 + -0.1 93,662 - +0.4 93,737 - Atu3088 0.13 +0.4 93,742 - Atu3088 0.14 -1.0 93,757 - Atu3088 0.15 -0.0 93,790 + Atu3088 0.17 +0.3 93,848 - Atu3088 0.22 +0.5 93,875 + Atu3088 0.24 +0.3 93,898 - Atu3088 0.26 +0.1 93,909 + Atu3088 0.27 +0.4 93,910 + Atu3088 0.27 -0.2 93,917 - Atu3088 0.27 -0.3 93,918 - Atu3088 0.27 +0.2 93,931 + Atu3088 0.28 -0.0 94,071 - Atu3088 0.39 +0.2 94,081 - Atu3088 0.40 +0.4 94,097 + Atu3088 0.41 +0.2 94,296 + Atu3088 0.57 +1.1
Or see this region's nucleotide sequence