Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3078 and Atu3079 are separated by 9 nucleotides Atu3079 and Atu3080 are separated by 102 nucleotides
Atu3078: Atu3078 - LysR family transcriptional regulator, at 84,258 to 85,136
Atu3078
Atu3079: Atu3079 - chromate transport protein, at 85,146 to 86,363
Atu3079
Atu3080: Atu3080 - hypothetical protein, at 86,466 to 87,689
Atu3080
Position (kb) 85
86
87 Strain fitness (log2 ratio) -1
0
1
2
3 at 84.149 kb on - strand at 84.195 kb on + strand at 84.347 kb on - strand, within Atu3078 at 84.433 kb on + strand, within Atu3078 at 84.441 kb on - strand, within Atu3078 at 84.453 kb on + strand, within Atu3078 at 84.523 kb on - strand, within Atu3078 at 84.727 kb on + strand, within Atu3078 at 84.737 kb on + strand, within Atu3078 at 84.822 kb on - strand, within Atu3078 at 85.010 kb on + strand, within Atu3078 at 85.016 kb on + strand, within Atu3078 at 85.120 kb on - strand at 85.121 kb on + strand at 85.144 kb on + strand at 85.156 kb on - strand at 85.182 kb on + strand at 85.182 kb on + strand at 85.190 kb on - strand at 85.249 kb on - strand at 85.288 kb on + strand, within Atu3079 at 85.467 kb on - strand, within Atu3079 at 85.473 kb on + strand, within Atu3079 at 85.503 kb on + strand, within Atu3079 at 85.504 kb on - strand, within Atu3079 at 85.608 kb on + strand, within Atu3079 at 85.690 kb on + strand, within Atu3079 at 85.693 kb on - strand, within Atu3079 at 85.698 kb on - strand, within Atu3079 at 85.721 kb on + strand, within Atu3079 at 85.782 kb on + strand, within Atu3079 at 85.782 kb on + strand, within Atu3079 at 85.814 kb on - strand, within Atu3079 at 85.944 kb on + strand, within Atu3079 at 85.990 kb on - strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.129 kb on + strand, within Atu3079 at 86.165 kb on + strand, within Atu3079 at 86.167 kb on + strand, within Atu3079 at 86.225 kb on + strand, within Atu3079 at 86.267 kb on + strand at 86.335 kb on + strand at 86.343 kb on - strand at 86.343 kb on - strand at 86.374 kb on + strand at 86.379 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.470 kb on - strand at 86.480 kb on - strand at 86.496 kb on - strand at 86.501 kb on - strand at 86.506 kb on - strand at 86.523 kb on + strand at 86.560 kb on - strand at 86.631 kb on + strand, within Atu3080 at 86.631 kb on + strand, within Atu3080 at 86.631 kb on + strand, within Atu3080 at 86.639 kb on - strand, within Atu3080 at 86.639 kb on - strand, within Atu3080 at 86.733 kb on - strand, within Atu3080 at 86.766 kb on + strand, within Atu3080 at 86.769 kb on - strand, within Atu3080 at 86.791 kb on + strand, within Atu3080 at 86.908 kb on - strand, within Atu3080 at 86.936 kb on + strand, within Atu3080 at 86.936 kb on + strand, within Atu3080 at 86.936 kb on + strand, within Atu3080 at 86.960 kb on - strand, within Atu3080 at 86.965 kb on - strand, within Atu3080 at 86.965 kb on - strand, within Atu3080 at 87.001 kb on - strand, within Atu3080 at 87.027 kb on + strand, within Atu3080 at 87.027 kb on + strand, within Atu3080 at 87.078 kb on - strand, within Atu3080 at 87.314 kb on - strand, within Atu3080 at 87.360 kb on + strand, within Atu3080 at 87.360 kb on + strand, within Atu3080
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 84,149 - +0.7 84,195 + +0.5 84,347 - Atu3078 0.10 +0.0 84,433 + Atu3078 0.20 +0.3 84,441 - Atu3078 0.21 +0.1 84,453 + Atu3078 0.22 +0.6 84,523 - Atu3078 0.30 +0.6 84,727 + Atu3078 0.53 -0.1 84,737 + Atu3078 0.54 -0.8 84,822 - Atu3078 0.64 +0.6 85,010 + Atu3078 0.86 -0.1 85,016 + Atu3078 0.86 +1.0 85,120 - +0.0 85,121 + +1.3 85,144 + -0.2 85,156 - +0.2 85,182 + +0.8 85,182 + +0.1 85,190 - +0.7 85,249 - +0.7 85,288 + Atu3079 0.12 +0.8 85,467 - Atu3079 0.26 -0.0 85,473 + Atu3079 0.27 +0.9 85,503 + Atu3079 0.29 +0.3 85,504 - Atu3079 0.29 -0.3 85,608 + Atu3079 0.38 +0.7 85,690 + Atu3079 0.45 +0.4 85,693 - Atu3079 0.45 -0.2 85,698 - Atu3079 0.45 +0.6 85,721 + Atu3079 0.47 +0.6 85,782 + Atu3079 0.52 +0.0 85,782 + Atu3079 0.52 -0.2 85,814 - Atu3079 0.55 +0.3 85,944 + Atu3079 0.66 +1.9 85,990 - Atu3079 0.69 +0.8 86,108 + Atu3079 0.79 +0.6 86,108 + Atu3079 0.79 +0.3 86,108 + Atu3079 0.79 +0.4 86,108 + Atu3079 0.79 +0.3 86,113 + Atu3079 0.79 -1.0 86,113 + Atu3079 0.79 +0.6 86,113 + Atu3079 0.79 +0.2 86,113 + Atu3079 0.79 +1.0 86,113 + Atu3079 0.79 +0.2 86,116 - Atu3079 0.80 -0.1 86,116 - Atu3079 0.80 +0.2 86,116 - Atu3079 0.80 -0.5 86,121 - Atu3079 0.80 +0.5 86,121 - Atu3079 0.80 -0.2 86,121 - Atu3079 0.80 +3.7 86,121 - Atu3079 0.80 +0.1 86,129 + Atu3079 0.81 +0.1 86,165 + Atu3079 0.84 +0.5 86,167 + Atu3079 0.84 +0.4 86,225 + Atu3079 0.89 +0.1 86,267 + +0.3 86,335 + +0.1 86,343 - +0.5 86,343 - +0.2 86,374 + +1.0 86,379 + -0.6 86,462 + +0.2 86,462 + +0.4 86,470 - +0.2 86,480 - -0.9 86,496 - +0.5 86,501 - +0.3 86,506 - -0.2 86,523 + +0.5 86,560 - +0.1 86,631 + Atu3080 0.13 +0.0 86,631 + Atu3080 0.13 +0.5 86,631 + Atu3080 0.13 +0.5 86,639 - Atu3080 0.14 -1.2 86,639 - Atu3080 0.14 -0.2 86,733 - Atu3080 0.22 +0.0 86,766 + Atu3080 0.25 +0.5 86,769 - Atu3080 0.25 +0.1 86,791 + Atu3080 0.27 +0.4 86,908 - Atu3080 0.36 +0.1 86,936 + Atu3080 0.38 +1.9 86,936 + Atu3080 0.38 -0.0 86,936 + Atu3080 0.38 +0.2 86,960 - Atu3080 0.40 +0.1 86,965 - Atu3080 0.41 +0.1 86,965 - Atu3080 0.41 +0.5 87,001 - Atu3080 0.44 +0.4 87,027 + Atu3080 0.46 +0.1 87,027 + Atu3080 0.46 +0.1 87,078 - Atu3080 0.50 +0.8 87,314 - Atu3080 0.69 +0.3 87,360 + Atu3080 0.73 -0.4 87,360 + Atu3080 0.73 +0.4
Or see this region's nucleotide sequence