Strain Fitness in Agrobacterium fabrum C58 around Atu3000

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3000 and Atu3001 are separated by 37 nucleotides Atu3000: Atu3000 - hypothetical protein, at 630 to 905 Atu3000 Atu3001: Atu3001 - hypothetical protein, at 943 to 1,656 Atu3001 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.395 kb on + strandat 0.638 kb on + strandat 0.646 kb on + strandat 1.050 kb on + strand, within Atu3001at 1.058 kb on - strand, within Atu3001at 1.109 kb on - strand, within Atu3001at 1.352 kb on + strand, within Atu3001at 1.436 kb on + strand, within Atu3001at 1.436 kb on + strand, within Atu3001at 1.738 kb on + strandat 1.746 kb on - strandat 1.746 kb on - strandat 1.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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395 + +1.5
638 + +1.3
646 + -1.1
1,050 + Atu3001 0.15 +0.6
1,058 - Atu3001 0.16 +0.3
1,109 - Atu3001 0.23 +1.9
1,352 + Atu3001 0.57 +0.9
1,436 + Atu3001 0.69 +0.9
1,436 + Atu3001 0.69 -1.9
1,738 + +0.3
1,746 - -0.1
1,746 - -0.4
1,861 - +0.9

Or see this region's nucleotide sequence