Strain Fitness in Agrobacterium fabrum C58 around Atu2829

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2827 and Atu2828 are separated by 61 nucleotidesAtu2828 and Atu2829 are separated by 29 nucleotidesAtu2829 and Atu2830 are separated by 19 nucleotidesAtu2830 and Atu2831 are separated by 11 nucleotides Atu2827: Atu2827 - hypothetical protein, at 2,832,355 to 2,832,567 Atu2827 Atu2828: Atu2828 - chromosome Partitioning Protein, at 2,832,629 to 2,833,510 Atu2828 Atu2829: Atu2829 - Chromosome partitioning protein, at 2,833,540 to 2,834,334 Atu2829 Atu2830: Atu2830 - glucose inhibited division protein, at 2,834,354 to 2,834,971 Atu2830 Atu2831: Atu2831 - glucose inhibited division protein A, at 2,834,983 to 2,836,866 Atu2831 Position (kb) 2833 2834 2835Strain fitness (log2 ratio) -1 0 1at 2833.527 kb on - strandat 2833.555 kb on - strandat 2834.938 kb on - strandat 2835.275 kb on + strand, within Atu2831at 2835.310 kb on - strand, within Atu2831

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,833,527 - +0.4
2,833,555 - -0.2
2,834,938 - -1.5
2,835,275 + Atu2831 0.15 -0.3
2,835,310 - Atu2831 0.17 -0.6

Or see this region's nucleotide sequence