Strain Fitness in Agrobacterium fabrum C58 around Atu2698

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2697 and Atu2698 are separated by 11 nucleotidesAtu2698 and Atu2699 are separated by 33 nucleotidesAtu2699 and Atu2700 are separated by 148 nucleotides Atu2697: Atu2697 - signal recognition particle protein, at 2,682,032 to 2,683,603 Atu2697 Atu2698: Atu2698 - chorismate mutase, at 2,683,615 to 2,683,932 Atu2698 Atu2699: Atu2699 - 30S ribosomal protein S16, at 2,683,966 to 2,684,346 Atu2699 Atu2700: Atu2700 - 16S rRNA processing protein, at 2,684,495 to 2,685,034 Atu2700 Position (kb) 2683 2684Strain fitness (log2 ratio) -1 0 1at 2684.426 kb on + strandat 2684.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,684,426 + +0.6
2,684,442 + +0.6

Or see this region's nucleotide sequence