Strain Fitness in Agrobacterium fabrum C58 around Atu2690

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2688 and Atu2689 are separated by 4 nucleotidesAtu2689 and Atu2690 are separated by 107 nucleotidesAtu2690 and Atu2691 are separated by 19 nucleotides Atu2688: Atu2688 - ABC transporter, membrane spanning protein (heme), at 2,672,770 to 2,673,531 Atu2688 Atu2689: Atu2689 - hypothetical protein, at 2,673,536 to 2,673,709 Atu2689 Atu2690: Atu2690 - thiol:disulfide interchange protein, at 2,673,817 to 2,674,305 Atu2690 Atu2691: Atu2691 - GGDEF family protein, at 2,674,325 to 2,675,470 Atu2691 Position (kb) 2673 2674 2675Strain fitness (log2 ratio) -1 0 1at 2673.520 kb on + strandat 2673.701 kb on + strandat 2674.270 kb on - strandat 2674.510 kb on - strand, within Atu2691at 2674.656 kb on - strand, within Atu2691at 2674.657 kb on + strand, within Atu2691at 2674.702 kb on - strand, within Atu2691at 2674.789 kb on + strand, within Atu2691at 2675.037 kb on - strand, within Atu2691at 2675.251 kb on - strand, within Atu2691

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,673,520 + -0.3
2,673,701 + -0.2
2,674,270 - -0.1
2,674,510 - Atu2691 0.16 -0.9
2,674,656 - Atu2691 0.29 -0.1
2,674,657 + Atu2691 0.29 -0.3
2,674,702 - Atu2691 0.33 -0.4
2,674,789 + Atu2691 0.40 -1.6
2,675,037 - Atu2691 0.62 +0.1
2,675,251 - Atu2691 0.81 +1.1

Or see this region's nucleotide sequence