Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2686 and Atu2687 are separated by 202 nucleotides Atu2687 and Atu2688 are separated by 74 nucleotides Atu2688 and Atu2689 are separated by 4 nucleotides Atu2689 and Atu2690 are separated by 107 nucleotides Atu2690 and Atu2691 are separated by 19 nucleotides
Atu2686: Atu2686 - ABC transporter, nucleotide binding/ATPase protein (heme), at 2,671,192 to 2,671,833
Atu2686
Atu2687: Atu2687 - ABC transporter, membrane spanning protein (heme), at 2,672,036 to 2,672,695
Atu2687
Atu2688: Atu2688 - ABC transporter, membrane spanning protein (heme), at 2,672,770 to 2,673,531
Atu2688
Atu2689: Atu2689 - hypothetical protein, at 2,673,536 to 2,673,709
Atu2689
Atu2690: Atu2690 - thiol:disulfide interchange protein, at 2,673,817 to 2,674,305
Atu2690
Atu2691: Atu2691 - GGDEF family protein, at 2,674,325 to 2,675,470
Atu2691
Position (kb)
2672
2673
2674 Strain fitness (log2 ratio)
-1
0
1 at 2671.838 kb on + strand at 2671.894 kb on - strand at 2671.894 kb on - strand at 2671.922 kb on - strand at 2671.943 kb on + strand at 2671.951 kb on - strand at 2672.015 kb on - strand at 2672.729 kb on + strand at 2672.759 kb on + strand at 2673.520 kb on + strand at 2673.701 kb on + strand at 2674.270 kb on - strand at 2674.510 kb on - strand, within Atu2691
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 2,671,838 + +1.1 2,671,894 - -0.0 2,671,894 - +0.0 2,671,922 - +0.2 2,671,943 + +0.4 2,671,951 - -1.2 2,672,015 - +0.2 2,672,729 + -0.1 2,672,759 + -0.1 2,673,520 + -0.3 2,673,701 + -0.2 2,674,270 - -0.1 2,674,510 - Atu2691 0.16 -0.9
Or see this region's nucleotide sequence