Strain Fitness in Agrobacterium fabrum C58 around Atu2687

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2686 and Atu2687 are separated by 202 nucleotidesAtu2687 and Atu2688 are separated by 74 nucleotidesAtu2688 and Atu2689 are separated by 4 nucleotides Atu2686: Atu2686 - ABC transporter, nucleotide binding/ATPase protein (heme), at 2,671,192 to 2,671,833 Atu2686 Atu2687: Atu2687 - ABC transporter, membrane spanning protein (heme), at 2,672,036 to 2,672,695 Atu2687 Atu2688: Atu2688 - ABC transporter, membrane spanning protein (heme), at 2,672,770 to 2,673,531 Atu2688 Atu2689: Atu2689 - hypothetical protein, at 2,673,536 to 2,673,709 Atu2689 Position (kb) 2672 2673Strain fitness (log2 ratio) -1 0 1at 2671.098 kb on - strandat 2671.098 kb on - strandat 2671.190 kb on - strandat 2671.838 kb on + strandat 2671.894 kb on - strandat 2671.894 kb on - strandat 2671.922 kb on - strandat 2671.943 kb on + strandat 2671.951 kb on - strandat 2672.015 kb on - strandat 2672.729 kb on + strandat 2672.759 kb on + strandat 2673.520 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,671,098 - +0.1
2,671,098 - +0.2
2,671,190 - +0.3
2,671,838 + +1.1
2,671,894 - -0.0
2,671,894 - +0.0
2,671,922 - +0.2
2,671,943 + +0.4
2,671,951 - -1.2
2,672,015 - +0.2
2,672,729 + -0.1
2,672,759 + -0.1
2,673,520 + -0.3

Or see this region's nucleotide sequence