Strain Fitness in Agrobacterium fabrum C58 around Atu2624

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2622 and Atu2623 are separated by 23 nucleotidesAtu2623 and Atu2624 are separated by 31 nucleotidesAtu2624 and Atu2625 overlap by 1 nucleotidesAtu2625 and Atu2626 are separated by 267 nucleotides Atu2622: Atu2622 - ATP synthase beta chain, at 2,604,717 to 2,606,171 Atu2622 Atu2623: Atu2623 - ATP synthase gamma chain, at 2,606,195 to 2,607,073 Atu2623 Atu2624: Atu2624 - ATP synthase alpha chain, at 2,607,105 to 2,608,634 Atu2624 Atu2625: Atu2625 - ATP Synthase delta chain, at 2,608,634 to 2,609,194 Atu2625 Atu2626: Atu2626 - hypothetical protein, at 2,609,462 to 2,609,848 Atu2626 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -1 0 1at 2609.387 kb on + strandat 2609.460 kb on + strandat 2609.460 kb on + strandat 2609.468 kb on - strandat 2609.470 kb on + strandat 2609.550 kb on + strand, within Atu2626at 2609.627 kb on - strand, within Atu2626at 2609.627 kb on - strand, within Atu2626

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,609,387 + -0.2
2,609,460 + +0.6
2,609,460 + +0.1
2,609,468 - +0.2
2,609,470 + +0.0
2,609,550 + Atu2626 0.23 -0.0
2,609,627 - Atu2626 0.43 +0.6
2,609,627 - Atu2626 0.43 +0.3

Or see this region's nucleotide sequence