Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2619 and Atu2620 are separated by 73 nucleotides Atu2620 and Atu2621 are separated by 23 nucleotides Atu2621 and Atu2622 are separated by 131 nucleotides Atu2622 and Atu2623 are separated by 23 nucleotides Atu2623 and Atu2624 are separated by 31 nucleotides
Atu2619: Atu2619 - NAD-dependent formate dehydrogenase, C subunit protein, at 2,603,089 to 2,603,904
Atu2619
Atu2620: Atu2620 - hypothetical protein, at 2,603,978 to 2,604,151
Atu2620
Atu2621: Atu2621 - ATP synthase epsilon chain, at 2,604,175 to 2,604,585
Atu2621
Atu2622: Atu2622 - ATP synthase beta chain, at 2,604,717 to 2,606,171
Atu2622
Atu2623: Atu2623 - ATP synthase gamma chain, at 2,606,195 to 2,607,073
Atu2623
Atu2624: Atu2624 - ATP synthase alpha chain, at 2,607,105 to 2,608,634
Atu2624
Position (kb)
2604
2605
2606
2607 Strain fitness (log2 ratio)
-1
0
1 at 2603.758 kb on - strand, within Atu2619 at 2603.758 kb on - strand, within Atu2619 at 2603.876 kb on - strand at 2603.945 kb on - strand at 2603.972 kb on - strand at 2604.022 kb on + strand, within Atu2620 at 2604.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 2,603,758 - Atu2619 0.82 -1.0 2,603,758 - Atu2619 0.82 -0.6 2,603,876 - -0.1 2,603,945 - -0.3 2,603,972 - -0.0 2,604,022 + Atu2620 0.25 -0.1 2,604,153 + +0.0
Or see this region's nucleotide sequence