Strain Fitness in Agrobacterium fabrum C58 around Atu2622

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2619 and Atu2620 are separated by 73 nucleotidesAtu2620 and Atu2621 are separated by 23 nucleotidesAtu2621 and Atu2622 are separated by 131 nucleotidesAtu2622 and Atu2623 are separated by 23 nucleotidesAtu2623 and Atu2624 are separated by 31 nucleotides Atu2619: Atu2619 - NAD-dependent formate dehydrogenase, C subunit protein, at 2,603,089 to 2,603,904 Atu2619 Atu2620: Atu2620 - hypothetical protein, at 2,603,978 to 2,604,151 Atu2620 Atu2621: Atu2621 - ATP synthase epsilon chain, at 2,604,175 to 2,604,585 Atu2621 Atu2622: Atu2622 - ATP synthase beta chain, at 2,604,717 to 2,606,171 Atu2622 Atu2623: Atu2623 - ATP synthase gamma chain, at 2,606,195 to 2,607,073 Atu2623 Atu2624: Atu2624 - ATP synthase alpha chain, at 2,607,105 to 2,608,634 Atu2624 Position (kb) 2604 2605 2606 2607Strain fitness (log2 ratio) -1 0 1at 2603.758 kb on - strand, within Atu2619at 2603.758 kb on - strand, within Atu2619at 2603.876 kb on - strandat 2603.945 kb on - strandat 2603.972 kb on - strandat 2604.022 kb on + strand, within Atu2620at 2604.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,603,758 - Atu2619 0.82 -1.0
2,603,758 - Atu2619 0.82 -0.6
2,603,876 - -0.1
2,603,945 - -0.3
2,603,972 - -0.0
2,604,022 + Atu2620 0.25 -0.1
2,604,153 + +0.0

Or see this region's nucleotide sequence