Strain Fitness in Agrobacterium fabrum C58 around Atu2213

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu8172 and Atu8173 are separated by 426 nucleotidesAtu8173 and Atu2213 are separated by 279 nucleotidesAtu2213 and Atu2214 are separated by 15 nucleotides Atu8172: Atu8172 - hypothetical protein, at 2,179,750 to 2,180,250 Atu8172 Atu8173: Atu8173 - hypothetical protein, at 2,180,677 to 2,180,940 Atu8173 Atu2213: Atu2213 - prolipoprotein diacylglyceryl transferase, at 2,181,220 to 2,182,062 Atu2213 Atu2214: Atu2214 - hypothetical protein, at 2,182,078 to 2,183,178 Atu2214 Position (kb) 2181 2182 2183Strain fitness (log2 ratio) -1 0 1at 2180.258 kb on + strandat 2180.380 kb on - strandat 2180.463 kb on + strandat 2180.471 kb on - strandat 2180.481 kb on - strandat 2180.503 kb on - strandat 2180.507 kb on + strandat 2180.515 kb on - strandat 2180.515 kb on - strandat 2180.991 kb on + strandat 2180.992 kb on - strandat 2181.000 kb on - strandat 2182.074 kb on - strandat 2182.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,180,258 + -0.1
2,180,380 - -1.1
2,180,463 + -0.9
2,180,471 - -0.1
2,180,481 - +0.1
2,180,503 - +0.3
2,180,507 + -0.4
2,180,515 - +0.2
2,180,515 - +0.9
2,180,991 + -0.3
2,180,992 - +0.3
2,181,000 - -0.1
2,182,074 - -0.3
2,182,083 - +0.4

Or see this region's nucleotide sequence