Strain Fitness in Agrobacterium fabrum C58 around Atu2102

Experiment: D,L-Malic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu2100 and Atu2101 overlap by 1 nucleotidesAtu2101 and Atu2102 are separated by 1 nucleotidesAtu2102 and Atu2103 are separated by 14 nucleotides Atu2100: Atu2100 - penicillin binding protein 2, at 2,065,236 to 2,066,978 Atu2100 Atu2101: Atu2101 - hypothetical protein, at 2,066,978 to 2,067,544 Atu2101 Atu2102: Atu2102 - S-adenosyl methionine-dependent methytransferase, at 2,067,546 to 2,068,571 Atu2102 Atu2103: Atu2103 - hypothetical protein, at 2,068,586 to 2,069,026 Atu2103 Position (kb) 2067 2068 2069Strain fitness (log2 ratio) -3 -2 -1 0 1at 2067.003 kb on - strandat 2069.075 kb on - strandat 2069.295 kb on - strandat 2069.443 kb on + strandat 2069.443 kb on + strandat 2069.451 kb on - strandat 2069.451 kb on - strandat 2069.451 kb on - strandat 2069.451 kb on - strandat 2069.487 kb on + strandat 2069.487 kb on + strandat 2069.495 kb on - strandat 2069.506 kb on + strandat 2069.523 kb on + strandat 2069.524 kb on - strandat 2069.534 kb on - strandat 2069.534 kb on - strandat 2069.534 kb on - strandat 2069.534 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
remove
2,067,003 - -2.8
2,069,075 - +0.0
2,069,295 - -0.3
2,069,443 + +0.9
2,069,443 + -0.3
2,069,451 - -0.1
2,069,451 - -0.1
2,069,451 - -0.3
2,069,451 - +0.1
2,069,487 + +0.4
2,069,487 + -0.0
2,069,495 - -0.2
2,069,506 + +0.1
2,069,523 + +0.4
2,069,524 - +0.1
2,069,534 - -1.3
2,069,534 - -1.2
2,069,534 - +0.3
2,069,534 - +0.5

Or see this region's nucleotide sequence