Strain Fitness in Agrobacterium fabrum C58 around Atu1927

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1925 and Atu1926 are separated by 303 nucleotidesAtu1926 and Atu1927 overlap by 4 nucleotidesAtu1927 and Atu1928 are separated by 333 nucleotidesAtu1928 and Atu8065 are separated by 16 nucleotides Atu1925: Atu1925 - 30S ribosomal protein S13, at 1,902,958 to 1,903,326 Atu1925 Atu1926: Atu1926 - adenylate kinase, at 1,903,630 to 1,904,220 Atu1926 Atu1927: Atu1927 - Preprotein translocase SECY subunit, at 1,904,217 to 1,905,557 Atu1927 Atu1928: Atu1928 - 50S ribosomal protein L15, at 1,905,891 to 1,906,370 Atu1928 Atu8065: Atu8065 - 50S ribosomal protein L30, at 1,906,387 to 1,906,593 Atu8065 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -1 0 1at 1903.554 kb on + strandat 1903.573 kb on + strandat 1903.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,903,554 + -0.5
1,903,573 + +0.1
1,903,606 + +0.5

Or see this region's nucleotide sequence