Strain Fitness in Agrobacterium fabrum C58 around Atu1824

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1822 and Atu1823 are separated by 22 nucleotidesAtu1823 and Atu1824 are separated by 72 nucleotidesAtu1824 and Atu1825 are separated by 198 nucleotides Atu1822: Atu1822 - transport system, at 1,800,987 to 1,802,258 Atu1822 Atu1823: Atu1823 - ABC transporter, nucleotide binding/ATPase protein, at 1,802,281 to 1,803,036 Atu1823 Atu1824: Atu1824 - ABC transporter subunit, at 1,803,109 to 1,804,578 Atu1824 Atu1825: Atu1825 - cysteine desulfurase, at 1,804,777 to 1,805,946 Atu1825 Position (kb) 1803 1804 1805Strain fitness (log2 ratio) -1 0 1at 1803.102 kb on - strandat 1804.700 kb on - strandat 1804.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,803,102 - -0.3
1,804,700 - -0.6
1,804,700 - -0.6

Or see this region's nucleotide sequence