Strain Fitness in Agrobacterium fabrum C58 around Atu1384

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1382 and Atu1383 overlap by 8 nucleotidesAtu1383 and Atu1384 overlap by 1 nucleotidesAtu1384 and Atu1385 are separated by 81 nucleotidesAtu1385 and Atu1386 overlap by 4 nucleotides Atu1382: Atu1382 - UDP glucosamine N-acyltransferase, at 1,376,888 to 1,377,955 Atu1382 Atu1383: Atu1383 - (3R)-Hydroxymyristoyl-(acyl carrier protein)- Dehydratase, at 1,377,948 to 1,378,412 Atu1383 Atu1384: Atu1384 - acyl-(acyl carrier protein)--UDP-N-acetylglucosamine O-acyltransferase, at 1,378,412 to 1,379,227 Atu1384 Atu1385: Atu1385 - hypothetical protein, at 1,379,309 to 1,380,112 Atu1385 Atu1386: Atu1386 - lipid A-disaccharide synthase, at 1,380,109 to 1,381,293 Atu1386 Position (kb) 1378 1379 1380Strain fitness (log2 ratio) -1 0 1at 1380.070 kb on + strandat 1380.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,380,070 + +0.2
1,380,108 + -1.4

Or see this region's nucleotide sequence