Strain Fitness in Agrobacterium fabrum C58 around Atu1108

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1107 and Atu1108 overlap by 4 nucleotidesAtu1108 and Atu1110 are separated by 297 nucleotides Atu1107: Atu1107 - hypothetical protein, at 1,097,302 to 1,098,390 Atu1107 Atu1108: Atu1108 - hypothetical protein, at 1,098,387 to 1,099,556 Atu1108 Atu1110: Atu1110 - cytosol aminopeptidase, at 1,099,854 to 1,101,347 Atu1110 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -1 0 1at 1099.645 kb on - strandat 1099.760 kb on - strandat 1099.805 kb on + strandat 1099.834 kb on + strandat 1099.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,099,645 - +1.0
1,099,760 - +0.3
1,099,805 + +0.9
1,099,834 + +0.3
1,099,968 + -0.2

Or see this region's nucleotide sequence