Strain Fitness in Agrobacterium fabrum C58 around Atu1105

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1104 and Atu1105 are separated by 26 nucleotidesAtu1105 and Atu1106 are separated by 295 nucleotides Atu1104: Atu1104 - pyridoxal phosphate biosynthesis protein, at 1,092,629 to 1,093,651 Atu1104 Atu1105: Atu1105 - hypothetical protein, at 1,093,678 to 1,094,625 Atu1105 Atu1106: Atu1106 - organic solvent tolerance protein, at 1,094,921 to 1,097,302 Atu1106 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -2 -1 0 1at 1093.157 kb on - strand, within Atu1104at 1094.660 kb on - strandat 1094.754 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,093,157 - Atu1104 0.52 -2.2
1,094,660 - +0.5
1,094,754 + +0.5

Or see this region's nucleotide sequence