Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1087 and Atu1088 are separated by 270 nucleotides Atu1088 and Atu1089 are separated by 14 nucleotides Atu1089 and Atu1090 are separated by 146 nucleotides Atu1090 and Atu1091 are separated by 13 nucleotides Atu1091 and Atu1092 are separated by 7 nucleotides
Atu1087: Atu1087 - secretion protein, at 1,078,706 to 1,079,773
Atu1087
Atu1088: Atu1088 - 50S ribosomal protein L9, at 1,080,044 to 1,080,619
Atu1088
Atu1089: Atu1089 - hypothetical protein, at 1,080,634 to 1,081,608
Atu1089
Atu1090: Atu1090 - 30S ribosomal protein S18, at 1,081,755 to 1,082,003
Atu1090
Atu1091: Atu1091 - 30S ribosomal protein S6, at 1,082,017 to 1,082,478
Atu1091
Atu1092: Atu1092 - hypothetical protein, at 1,082,486 to 1,082,764
Atu1092
Position (kb)
1080
1081
1082 Strain fitness (log2 ratio)
-1
0
1 at 1079.644 kb on + strand, within Atu1087 at 1079.695 kb on + strand at 1079.713 kb on - strand at 1079.747 kb on + strand at 1079.781 kb on + strand at 1079.789 kb on - strand at 1079.789 kb on - strand at 1079.795 kb on + strand at 1079.911 kb on - strand at 1079.935 kb on + strand at 1079.935 kb on + strand at 1079.943 kb on - strand at 1079.945 kb on + strand at 1079.953 kb on - strand at 1079.955 kb on + strand at 1079.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,079,644 + Atu1087 0.88 -0.3 1,079,695 + +0.4 1,079,713 - +0.2 1,079,747 + -0.4 1,079,781 + +0.2 1,079,789 - +0.0 1,079,789 - +0.3 1,079,795 + +1.5 1,079,911 - -0.1 1,079,935 + +0.2 1,079,935 + -0.6 1,079,943 - -0.7 1,079,945 + +1.1 1,079,953 - -0.3 1,079,955 + +0.3 1,079,955 + -0.1
Or see this region's nucleotide sequence