Strain Fitness in Agrobacterium fabrum C58 around Atu1089

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1087 and Atu1088 are separated by 270 nucleotidesAtu1088 and Atu1089 are separated by 14 nucleotidesAtu1089 and Atu1090 are separated by 146 nucleotidesAtu1090 and Atu1091 are separated by 13 nucleotidesAtu1091 and Atu1092 are separated by 7 nucleotides Atu1087: Atu1087 - secretion protein, at 1,078,706 to 1,079,773 Atu1087 Atu1088: Atu1088 - 50S ribosomal protein L9, at 1,080,044 to 1,080,619 Atu1088 Atu1089: Atu1089 - hypothetical protein, at 1,080,634 to 1,081,608 Atu1089 Atu1090: Atu1090 - 30S ribosomal protein S18, at 1,081,755 to 1,082,003 Atu1090 Atu1091: Atu1091 - 30S ribosomal protein S6, at 1,082,017 to 1,082,478 Atu1091 Atu1092: Atu1092 - hypothetical protein, at 1,082,486 to 1,082,764 Atu1092 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -1 0 1at 1079.644 kb on + strand, within Atu1087at 1079.695 kb on + strandat 1079.713 kb on - strandat 1079.747 kb on + strandat 1079.781 kb on + strandat 1079.789 kb on - strandat 1079.789 kb on - strandat 1079.795 kb on + strandat 1079.911 kb on - strandat 1079.935 kb on + strandat 1079.935 kb on + strandat 1079.943 kb on - strandat 1079.945 kb on + strandat 1079.953 kb on - strandat 1079.955 kb on + strandat 1079.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,079,644 + Atu1087 0.88 -0.3
1,079,695 + +0.4
1,079,713 - +0.2
1,079,747 + -0.4
1,079,781 + +0.2
1,079,789 - +0.0
1,079,789 - +0.3
1,079,795 + +1.5
1,079,911 - -0.1
1,079,935 + +0.2
1,079,935 + -0.6
1,079,943 - -0.7
1,079,945 + +1.1
1,079,953 - -0.3
1,079,955 + +0.3
1,079,955 + -0.1

Or see this region's nucleotide sequence