Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0973 and Atu0974 overlap by 4 nucleotides Atu0974 and Atu0975 overlap by 4 nucleotides Atu0975 and Atu0976 overlap by 4 nucleotides Atu0976 and Atu0977 are separated by 153 nucleotides
Atu0973: Atu0973 - cycH protein, at 961,700 to 962,872
Atu0973
Atu0974: Atu0974 - cytochrome-c biosynthesis heme-carrier protein cycJ, at 962,869 to 963,366
Atu0974
Atu0975: Atu0975 - cytochrome c-type synthesis protein, at 963,363 to 965,354
Atu0975
Atu0976: Atu0976 - cycL protein, at 965,351 to 965,947
Atu0976
Atu0977: Atu0977 - serine protease DO-like protease, at 966,101 to 967,672
Atu0977
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -1
0
1 at 962.438 kb on + strand, within Atu0973 at 962.557 kb on + strand, within Atu0973 at 962.557 kb on + strand, within Atu0973 at 962.557 kb on + strand, within Atu0973 at 962.557 kb on + strand, within Atu0973 at 962.557 kb on + strand, within Atu0973 at 962.557 kb on + strand, within Atu0973 at 962.557 kb on + strand, within Atu0973 at 962.565 kb on - strand, within Atu0973 at 962.565 kb on - strand, within Atu0973 at 962.565 kb on - strand, within Atu0973 at 962.585 kb on + strand, within Atu0973 at 962.741 kb on + strand, within Atu0973 at 962.816 kb on + strand at 963.335 kb on + strand at 965.349 kb on + strand at 965.443 kb on + strand, within Atu0976 at 965.453 kb on + strand, within Atu0976 at 965.488 kb on + strand, within Atu0976 at 966.163 kb on + strand at 966.266 kb on + strand, within Atu0977
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 962,438 + Atu0973 0.63 +0.8 962,557 + Atu0973 0.73 +0.0 962,557 + Atu0973 0.73 -0.2 962,557 + Atu0973 0.73 +0.4 962,557 + Atu0973 0.73 +0.2 962,557 + Atu0973 0.73 -1.5 962,557 + Atu0973 0.73 +0.0 962,557 + Atu0973 0.73 -0.8 962,565 - Atu0973 0.74 -1.1 962,565 - Atu0973 0.74 -0.8 962,565 - Atu0973 0.74 -0.1 962,585 + Atu0973 0.75 -0.3 962,741 + Atu0973 0.89 -0.3 962,816 + -0.2 963,335 + +0.6 965,349 + -0.3 965,443 + Atu0976 0.15 +0.7 965,453 + Atu0976 0.17 -0.1 965,488 + Atu0976 0.23 +0.8 966,163 + +0.3 966,266 + Atu0977 0.10 -0.8
Or see this region's nucleotide sequence