Strain Fitness in Agrobacterium fabrum C58 around Atu0915

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0912 and Atu0913 overlap by 4 nucleotidesAtu0913 and Atu0914 overlap by 4 nucleotidesAtu0914 and Atu0915 overlap by 4 nucleotidesAtu0915 and Atu0916 are separated by 433 nucleotides Atu0912: Atu0912 - Na+/H+ antiporter, at 902,102 to 903,679 Atu0912 Atu0913: Atu0913 - Na+/H+ antiporter, at 903,676 to 904,155 Atu0913 Atu0914: Atu0914 - Na+/H+ antiporter, at 904,152 to 904,538 Atu0914 Atu0915: Atu0915 - Na+/H+ antiporter, at 904,535 to 904,867 Atu0915 Atu0916: Atu0916 - transcriptional regulator, at 905,301 to 905,729 Atu0916 Position (kb) 904 905Strain fitness (log2 ratio) -1 0 1 2at 903.620 kb on + strandat 903.637 kb on + strandat 903.639 kb on + strandat 903.639 kb on + strandat 903.645 kb on - strandat 903.674 kb on - strandat 905.221 kb on + strandat 905.433 kb on + strand, within Atu0916at 905.772 kb on + strandat 905.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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903,620 + -0.3
903,637 + -0.1
903,639 + -0.2
903,639 + +0.1
903,645 - +2.2
903,674 - -0.2
905,221 + -0.5
905,433 + Atu0916 0.31 -0.2
905,772 + +0.7
905,788 - +0.1

Or see this region's nucleotide sequence