Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0909 and Atu0910 overlap by 4 nucleotides Atu0910 and Atu0911 overlap by 1 nucleotides Atu0911 and Atu0912 are separated by 19 nucleotides Atu0912 and Atu0913 overlap by 4 nucleotides Atu0913 and Atu0914 overlap by 4 nucleotides Atu0914 and Atu0915 overlap by 4 nucleotides
Atu0909: Atu0909 - Na+/H+ antiporter, at 898,920 to 901,289
Atu0909
Atu0910: Atu0910 - Na+/H+ antiporter, at 901,286 to 901,705
Atu0910
Atu0911: Atu0911 - Na+/H+ antiporter, at 901,705 to 902,082
Atu0911
Atu0912: Atu0912 - Na+/H+ antiporter, at 902,102 to 903,679
Atu0912
Atu0913: Atu0913 - Na+/H+ antiporter, at 903,676 to 904,155
Atu0913
Atu0914: Atu0914 - Na+/H+ antiporter, at 904,152 to 904,538
Atu0914
Atu0915: Atu0915 - Na+/H+ antiporter, at 904,535 to 904,867
Atu0915
Position (kb) 902
903
904 Strain fitness (log2 ratio) -1
0
1
2 at 902.039 kb on + strand, within Atu0911 at 902.978 kb on + strand, within Atu0912 at 902.983 kb on + strand, within Atu0912 at 903.620 kb on + strand at 903.637 kb on + strand at 903.639 kb on + strand at 903.639 kb on + strand at 903.645 kb on - strand at 903.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 902,039 + Atu0911 0.88 +1.1 902,978 + Atu0912 0.56 +0.7 902,983 + Atu0912 0.56 +0.3 903,620 + -0.3 903,637 + -0.1 903,639 + -0.2 903,639 + +0.1 903,645 - +2.2 903,674 - -0.2
Or see this region's nucleotide sequence