Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0877 and Atu0878 overlap by 9 nucleotides Atu0878 and Atu0879 are separated by 134 nucleotides Atu0879 and Atu0881 are separated by 227 nucleotides Atu0881 and Atu0882 are separated by 87 nucleotides
Atu0877: Atu0877 - hypothetical protein, at 873,564 to 874,415
Atu0877
Atu0878: Atu0878 - hypothetical protein, at 874,407 to 875,138
Atu0878
Atu0879: Atu0879 - RhtB family transporter, at 875,273 to 875,917
Atu0879
Atu0881: Atu0881 - cytochrome C-556, at 876,145 to 876,552
Atu0881
Atu0882: Atu0882 - hypothetical protein, at 876,640 to 877,560
Atu0882
Position (kb) 875
876 Strain fitness (log2 ratio) -1
0
1
2 at 874.330 kb on - strand at 874.434 kb on - strand at 874.437 kb on + strand at 874.445 kb on - strand at 874.615 kb on + strand, within Atu0878 at 874.672 kb on + strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.690 kb on - strand, within Atu0878 at 874.736 kb on - strand, within Atu0878 at 874.761 kb on - strand, within Atu0878 at 874.797 kb on - strand, within Atu0878 at 874.879 kb on + strand, within Atu0878 at 874.940 kb on + strand, within Atu0878 at 874.948 kb on - strand, within Atu0878 at 874.996 kb on + strand, within Atu0878 at 875.004 kb on - strand, within Atu0878 at 875.010 kb on - strand, within Atu0878 at 875.110 kb on + strand at 875.118 kb on - strand at 875.162 kb on - strand at 875.264 kb on + strand at 875.330 kb on - strand at 875.336 kb on + strand at 875.342 kb on + strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.359 kb on + strand, within Atu0879 at 875.533 kb on - strand, within Atu0879 at 875.543 kb on - strand, within Atu0879 at 875.629 kb on - strand, within Atu0879 at 875.681 kb on - strand, within Atu0879 at 875.730 kb on + strand, within Atu0879 at 875.730 kb on + strand, within Atu0879 at 875.738 kb on - strand, within Atu0879 at 875.738 kb on - strand, within Atu0879 at 875.934 kb on + strand at 875.993 kb on + strand at 876.150 kb on + strand at 876.233 kb on + strand, within Atu0881 at 876.288 kb on + strand, within Atu0881 at 876.321 kb on + strand, within Atu0881 at 876.361 kb on - strand, within Atu0881 at 876.370 kb on - strand, within Atu0881 at 876.403 kb on - strand, within Atu0881 at 876.403 kb on - strand, within Atu0881 at 876.419 kb on - strand, within Atu0881 at 876.419 kb on - strand, within Atu0881 at 876.434 kb on - strand, within Atu0881 at 876.539 kb on - strand at 876.619 kb on + strand at 876.627 kb on - strand at 876.743 kb on + strand, within Atu0882 at 876.763 kb on - strand, within Atu0882 at 876.769 kb on + strand, within Atu0882 at 876.792 kb on + strand, within Atu0882 at 876.792 kb on + strand, within Atu0882 at 876.800 kb on - strand, within Atu0882 at 876.816 kb on + strand, within Atu0882 at 876.824 kb on - strand, within Atu0882 at 876.840 kb on + strand, within Atu0882 at 876.848 kb on - strand, within Atu0882 at 876.904 kb on - strand, within Atu0882
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 874,330 - +0.3 874,434 - -0.2 874,437 + +0.7 874,445 - +0.2 874,615 + Atu0878 0.28 -0.9 874,672 + Atu0878 0.36 +0.1 874,680 - Atu0878 0.37 +0.2 874,680 - Atu0878 0.37 +0.1 874,680 - Atu0878 0.37 -0.1 874,690 - Atu0878 0.39 +0.2 874,736 - Atu0878 0.45 -0.0 874,761 - Atu0878 0.48 +0.3 874,797 - Atu0878 0.53 +1.2 874,879 + Atu0878 0.64 +0.2 874,940 + Atu0878 0.73 -1.2 874,948 - Atu0878 0.74 -0.6 874,996 + Atu0878 0.80 +1.8 875,004 - Atu0878 0.82 +1.0 875,010 - Atu0878 0.82 +0.4 875,110 + -0.1 875,118 - -0.4 875,162 - +0.5 875,264 + +0.0 875,330 - +0.8 875,336 + -0.8 875,342 + Atu0879 0.11 +0.2 875,350 - Atu0879 0.12 -0.1 875,350 - Atu0879 0.12 +0.5 875,359 + Atu0879 0.13 +1.0 875,533 - Atu0879 0.40 +0.2 875,543 - Atu0879 0.42 +0.0 875,629 - Atu0879 0.55 +0.5 875,681 - Atu0879 0.63 +0.1 875,730 + Atu0879 0.71 +0.6 875,730 + Atu0879 0.71 +0.4 875,738 - Atu0879 0.72 +1.1 875,738 - Atu0879 0.72 -0.4 875,934 + -0.1 875,993 + -0.7 876,150 + +0.7 876,233 + Atu0881 0.22 -0.0 876,288 + Atu0881 0.35 +0.2 876,321 + Atu0881 0.43 +1.1 876,361 - Atu0881 0.53 +0.1 876,370 - Atu0881 0.55 -1.6 876,403 - Atu0881 0.63 -0.0 876,403 - Atu0881 0.63 -0.2 876,419 - Atu0881 0.67 -0.4 876,419 - Atu0881 0.67 -0.1 876,434 - Atu0881 0.71 -0.1 876,539 - +0.1 876,619 + +0.1 876,627 - +0.8 876,743 + Atu0882 0.11 +0.2 876,763 - Atu0882 0.13 -0.4 876,769 + Atu0882 0.14 -0.2 876,792 + Atu0882 0.17 +0.3 876,792 + Atu0882 0.17 -0.2 876,800 - Atu0882 0.17 +0.1 876,816 + Atu0882 0.19 +0.6 876,824 - Atu0882 0.20 -0.3 876,840 + Atu0882 0.22 -0.2 876,848 - Atu0882 0.23 +0.2 876,904 - Atu0882 0.29 -1.0
Or see this region's nucleotide sequence