Strain Fitness in Agrobacterium fabrum C58 around Atu0716

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0714 and Atu0715 are separated by 73 nucleotidesAtu0715 and Atu0716 are separated by 79 nucleotidesAtu0716 and Atu0717 are separated by 1 nucleotidesAtu0717 and Atu0718 are separated by 281 nucleotides Atu0714: Atu0714 - ATP synthase A chain, at 715,883 to 716,632 Atu0714 Atu0715: Atu0715 - ATP synthase epsilon chain, at 716,706 to 716,933 Atu0715 Atu0716: Atu0716 - ATP synthase B, at 717,013 to 717,654 Atu0716 Atu0717: Atu0717 - ATP synthase B chain, at 717,656 to 718,141 Atu0717 Atu0718: Atu0718 - hypothetical protein, at 718,423 to 718,884 Atu0718 Position (kb) 717 718Strain fitness (log2 ratio) -1 0 1at 718.351 kb on - strandat 718.411 kb on + strandat 718.512 kb on - strand, within Atu0718at 718.516 kb on - strand, within Atu0718at 718.652 kb on - strand, within Atu0718

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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718,351 - -0.1
718,411 + +0.8
718,512 - Atu0718 0.19 +0.3
718,516 - Atu0718 0.20 -0.3
718,652 - Atu0718 0.50 -0.0

Or see this region's nucleotide sequence